Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040332.1-P | Field mustard | nucleus | 87.36 | 87.26 |
| CDY37020 | Canola | nucleus | 86.79 | 86.89 |
| CDY27400 | Canola | nucleus | 85.99 | 86.48 |
| CDX74700 | Canola | nucleus | 86.33 | 86.04 |
| CDY18962 | Canola | nucleus | 85.54 | 86.03 |
| Bra004879.1-P | Field mustard | nucleus | 85.88 | 83.41 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 55.69 | 55.69 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 22.1 | 50.79 |
| KRH75261 | Soybean | nucleus | 50.34 | 50.23 |
| Solyc11g013370.1.1 | Tomato | nucleus | 48.41 | 50.18 |
| KRH30315 | Soybean | nucleus | 50.23 | 50.17 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 43.85 | 43.7 |
| Os04t0550400-01 | Rice | nucleus | 42.6 | 42.31 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 42.03 | 42.27 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 41.46 | 41.84 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 41.46 | 41.84 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 41.69 | 41.78 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 41.57 | 41.67 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 41.23 | 41.61 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 41.34 | 41.44 |
| EER88892 | Sorghum | cytosol | 38.95 | 40.19 |
| Zm00001d014640_P035 | Maize | cytosol | 39.07 | 39.88 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 22.44 | 38.93 |
| Zm00001d036507_P003 | Maize | cytosol | 36.45 | 36.74 |
| AT1G55250.1 | Thale cress | nucleus | 27.68 | 27.0 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | EntrezGene:819104 | UniProt:A0A178VUC4 | ProteinID:AAM14833.1 | ProteinID:AAM14834.1 |
| ProteinID:AEC10489.1 | ArrayExpress:AT2G44950 | EnsemblPlantsGene:AT2G44950 | RefSeq:AT2G44950 | TAIR:AT2G44950 | RefSeq:AT2G44950-TAIR-G |
| EnsemblPlants:AT2G44950.1 | TAIR:AT2G44950.1 | EMBL:AY081322 | Unigene:At.43266 | EMBL:BT010360 | ncoils:Coil |
| InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0006325 | GO:GO:0006464 | GO:GO:0006513 | GO:GO:0006950 | GO:GO:0007049 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009653 |
| GO:GO:0009791 | GO:GO:0009817 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0010162 | GO:GO:0010228 |
| GO:GO:0010389 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016567 | GO:GO:0016569 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0033523 | GO:GO:0040007 | GO:GO:0042803 | GO:GO:0045087 |
| GO:GO:0046872 | GO:GO:0051301 | GO:GO:0051781 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_182022.2 |
| ProteinID:OAP09424.1 | PFAM:PF13920 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0006339 | PO:PO:0006340 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | UniProt:Q8RXD6 | Symbol:RDO4 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000AA7B5 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
Coordinates
chr2:-:18542175..18548652
Molecular Weight (calculated)
99724.4 Da
IEP (calculated)
6.822
GRAVY (calculated)
-0.667
Length
878 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.