Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P26970_001 | Banana | nucleus | 33.14 | 76.44 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 40.41 | 70.36 |
| TraesCS3B01G401200.2 | Wheat | nucleus | 53.8 | 54.48 |
| TraesCS3A01G369300.2 | Wheat | nucleus | 53.69 | 54.37 |
| VIT_15s0021g02140.t01 | Wine grape | nucleus | 54.03 | 54.21 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 53.46 | 54.14 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 53.58 | 53.88 |
| TraesCS6B01G274100.2 | Wheat | nucleus | 53.46 | 53.77 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 52.89 | 53.38 |
| TraesCS6A01G251200.2 | Wheat | nucleus | 53.01 | 53.31 |
| Os04t0550400-01 | Rice | nucleus | 53.35 | 53.17 |
| EER88892 | Sorghum | cytosol | 50.62 | 52.41 |
| Zm00001d014640_P035 | Maize | cytosol | 50.17 | 51.4 |
| KRH30315 | Soybean | nucleus | 49.83 | 49.94 |
| Solyc11g013370.1.1 | Tomato | nucleus | 48.01 | 49.94 |
| KRH75261 | Soybean | nucleus | 49.72 | 49.77 |
| Zm00001d036507_P003 | Maize | cytosol | 47.67 | 48.22 |
| AT2G44950.1 | Thale cress | nucleus | 43.7 | 43.85 |
| CDX74700 | Canola | nucleus | 43.47 | 43.47 |
| Bra040332.1-P | Field mustard | nucleus | 43.25 | 43.34 |
| CDY37020 | Canola | nucleus | 43.02 | 43.22 |
| CDY27400 | Canola | nucleus | 42.79 | 43.18 |
| CDY18962 | Canola | nucleus | 42.79 | 43.18 |
| Bra004879.1-P | Field mustard | nucleus | 43.25 | 42.15 |
| GSMUA_Achr6P06310_001 | Banana | nucleus | 34.73 | 35.13 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr1G01610_001 | EnsemblPlants:GSMUA_Achr1P01610_001 | EnsemblPlants:GSMUA_Achr1T01610_001 |
| InterPro:IPR001841 | InterPro:IPR013083 | UniProt:M0RW69 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 |
| PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296C6DC | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
E3 ubiquitin-protein ligase BRE1-like 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G01610_001]
Coordinates
chr1:+:1328538..1339053
Molecular Weight (calculated)
100606.0 Da
IEP (calculated)
6.771
GRAVY (calculated)
-0.581
Length
881 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSTGEPGRK RRHFSSISPT GAGPAAKKQP FAPFSEDKKL DVAVLRYKNQ KLAEQLEAQK FEYLALENKF HRLKEKQETH DDTLVVVNKY WGRLVGDLVS
101: LSVSASRSTG AVHLKDSHVT ENGPVSHTED DFLTRLTETG ATECSDDVAP TLNQNDLQAA QLTKKNILQN IICSFNHVWH VNEVCAAAAL ATLPEDEPSR
201: TLLKTAKDLE VEIRKFLMAV SDLHLKHRLL ADNVQNHRDV DIKNKAECKR LAEELANTVS ELEESNRRLT VLKSQKDTAQ TPRFLFQTLG NKPVGADKVK
301: DVQKDMQDME FYLKELMDLV SSRLTEISRL NEERIEILKK LAYLRNALMN VKSISSSKAF QLLNAHLQGS REEMDVCRAL LEKLQVEKDS FSWHEKEVNL
401: KVELADIAQR VSLFSESRIA ELEQILQKLA NERVLLETKF EEATREPSRK EIIHEFKALV SSLPKDMGIM QSEIDKNKGA AVELNSLRAE VQSLSSMLHR
501: KENEIKSLSG NSAHQLSEIK KLHSVLHDLR ESNQESMLFL EMYKRESTDS RDVIESKDSE YKTWALVQSF KSSLDEHNLE LRVKAAIEAE ATSQKRLTSA
601: EAEIDELRRK LEACGRDISK LSEILKSKHE EGEAYISEIE SIGQAYEDMQ TQNQHLLQQI IERDDYNIKL VVEGVKATQL QEALRLELQT MNKKLQQANL
701: LVDLYNIKVS QMDDLLKVCS DQVGKLAEDG WQSTVMYENT KKRLLEVQTE SDNLRQSFDG MQNKVEKGRV DVANMLMELE KERYDKKRVE EGLDVMTRKA
801: AYLRAQINGS TVLEKLRQEV KEYRGILKCS ICLNRQKEVV IVKCYHLFCH QCIQRTSSSR QRKCPTCGTS FGPNDVKPIY I
101: LSVSASRSTG AVHLKDSHVT ENGPVSHTED DFLTRLTETG ATECSDDVAP TLNQNDLQAA QLTKKNILQN IICSFNHVWH VNEVCAAAAL ATLPEDEPSR
201: TLLKTAKDLE VEIRKFLMAV SDLHLKHRLL ADNVQNHRDV DIKNKAECKR LAEELANTVS ELEESNRRLT VLKSQKDTAQ TPRFLFQTLG NKPVGADKVK
301: DVQKDMQDME FYLKELMDLV SSRLTEISRL NEERIEILKK LAYLRNALMN VKSISSSKAF QLLNAHLQGS REEMDVCRAL LEKLQVEKDS FSWHEKEVNL
401: KVELADIAQR VSLFSESRIA ELEQILQKLA NERVLLETKF EEATREPSRK EIIHEFKALV SSLPKDMGIM QSEIDKNKGA AVELNSLRAE VQSLSSMLHR
501: KENEIKSLSG NSAHQLSEIK KLHSVLHDLR ESNQESMLFL EMYKRESTDS RDVIESKDSE YKTWALVQSF KSSLDEHNLE LRVKAAIEAE ATSQKRLTSA
601: EAEIDELRRK LEACGRDISK LSEILKSKHE EGEAYISEIE SIGQAYEDMQ TQNQHLLQQI IERDDYNIKL VVEGVKATQL QEALRLELQT MNKKLQQANL
701: LVDLYNIKVS QMDDLLKVCS DQVGKLAEDG WQSTVMYENT KKRLLEVQTE SDNLRQSFDG MQNKVEKGRV DVANMLMELE KERYDKKRVE EGLDVMTRKA
801: AYLRAQINGS TVLEKLRQEV KEYRGILKCS ICLNRQKEVV IVKCYHLFCH QCIQRTSSSR QRKCPTCGTS FGPNDVKPIY I
001: MASTGEPDRK RRHFSSISPS EAAAAVKKQP FFWPSSEDKL DTAVLQFQNL KLSQKLEAQQ VECSILEDKL SQIKEKQLPY NSSLKTVHKS WEKLTASVES
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
101: CSVRVSDSSS GAHRFVNKED GSSPAVKNDF INRLLETGAT ESSSSNICSN QMEENGVNTS SQMTQTLYNL VAATEDLRCL KDELYPTVLR TNLGKDLCGQ
201: LALSELESEI KSFRGDLDDV LVKFKSLSRE LQSHRDADAK VRVDLKRIRG ELEDEVVELQ QCNGDLSALR AERDATAGAF FPVLSLGNKL ATSDRERDKQ
301: RDLQDMETVL KELTVLASGR LQQLKNLHEE RTKMLGKMSN LQNKSKSVRC ISSSQACLSL KDQLEKSKEA VFQYMALLEK LQVEKDSIVW KEREINIKNE
401: LGDVSRKTSA VTDSRMASLD SEIQKQLDEK MRIKTRLGNI SRERGRKEIF ADMKALISSF PEEMSSMRSQ LNNYKETAGG IHSLRADVQS LSGVLCRKTK
501: EYEALQLRSA DYASQLGDLN ATVCDLKNSH EELKLFLDMY KRESTDARDI AEAKEQEYRA WAHVQSLKSS LDEQNLELRV KAANEAEAVS QQMLAAAEAE
601: IADLRQKMDD CKRDVAKHSD ILKSKHEEHG TYLSEIQTIG SAYEDIVPQN QQLLLQVTER DDYNIKLFLE GITSRQMQDT LLIDKYIMDK DIQQGSAYAS
701: FLSKKSSRIE DQLRFCTDQF QKLAEDKYQK SVSLENLQKK RADIGNGLEQ ARSRLEESHS KVEQSRLDYG ALELELEIER FNRRRIEEEM EIAKKKVSRL
801: RSLIEGSSAI QKLRQELSEF KEILKCKACN DRPKEVVITK CYHLFCNPCV QKLTGTRQKK CPTCSASFGP NDIKPIYI
Arabidopsis Description
HUB1E3 ubiquitin-protein ligase BRE1-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.