Factsheet for GSMUA_Achr3P29180_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P32460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	GSMUA_Achr3P32460_001	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G464500.1	Wheat	cytosol	71.13	77.69
TraesCS7D01G452100.1	Wheat	cytosol	71.83	77.27
HORVU7Hr1G106630.1	Barley	cytosol	71.83	77.27
TraesCS7B01G365000.1	Wheat	cytosol	71.48	77.19
TraesCS7B01G364500.1	Wheat	cytosol	71.48	76.89
HORVU7Hr1G106500.1	Barley	nucleus	71.48	76.89
TraesCS7A01G464000.1	Wheat	cytosol	71.48	76.89
Os08t0204800-01	Rice	cytosol	71.48	76.89
TraesCS7D01G451600.1	Wheat	cytosol	71.13	76.52
EES14698	Sorghum	cytosol	71.13	75.94
Zm00001d024292_P002	Maize	cytosol	70.77	73.36
VIT_12s0059g01290.t01	Wine grape	nucleus	69.37	65.67
Bra005537.1-P	Field mustard	cytosol	57.39	65.46
KRH35436	Soybean	cytosol	61.97	64.47
GSMUA_Achr5P14990_001	Banana	plasma membrane	60.56	63.94
CDY19427	Canola	cytosol	64.08	63.86
KRG91378	Soybean	cytosol	61.27	63.74
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	64.79	63.67
AT2G32980.1	Thale cress	nucleus	66.2	63.51
CDX84714	Canola	nucleus	65.14	62.5
Bra022916.1-P	Field mustard	nucleus	64.44	62.46
CDY17122	Canola	cytosol	62.68	62.02
CDX79491	Canola	cytosol	65.14	58.73

Protein Annotations

EnsemblPlants:GSMUA_Achr3P29180_001	EnsemblPlants:GSMUA_Achr3T29180_001	EnsemblPlantsGene:GSMUA_Achr3G29180_001	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	ncoils:Coil	PANTHER:PTHR16039
PFAM:PF15003	UniParc:UPI0002958F93	UniProt:M0SIT4	MapMan:20.1.2.2.2	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G29180_001]

Coordinates

chr3:-:28418561..28424359

Molecular Weight (calculated)

31185.9 Da

IEP (calculated)

5.429

GRAVY (calculated)

-0.464

Length

284 amino acids

Sequence
(BLAST)

001: MSVSSDTGGA GKKAPRRLGG MAEALAIASD LGFPIPPVQD DQQGLSNSIA ADKGDDLIRV LRELTTVQRN IANLQVELQG RKDDKNVAHL THVSEMEKKC
101: ESLARITAIL KDVIQNKDRI IARLQQPYSL DCIPVEAEYQ KQFSELLLKA ASDYGALTAA VGDFQWCQNF KESPTVWGEM LRPIPAALAS CTRFFEAMSA
201: MRDSFATLQQ FRVSNSSLPT TPSDSSGGDS KYVTPPHWRE GMTSSDDSMV DGWRQQNAEG HPMEATDDIG QRRLSWPSPV KKGL

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.