Factsheet for Bra022916.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006136.1-P
Bra023354.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G32980.1	Bra006136.1-P	AT5G11980.1	21798944
AT2G32980.1	Bra023354.1-P	AT5G11980.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84714	Canola	nucleus	97.61	96.62
CDX79491	Canola	cytosol	97.95	91.11
AT2G32980.1	Thale cress	nucleus	87.03	86.15
Bra005537.1-P	Field mustard	cytosol	70.65	83.13
VIT_12s0059g01290.t01	Wine grape	nucleus	78.16	76.33
Solyc08g013990.2.1	Tomato	mitochondrion, nucleus	73.72	74.74
KRG91378	Soybean	cytosol	67.92	72.89
KRH35436	Soybean	cytosol	67.24	72.16
TraesCS7A01G464500.1	Wheat	cytosol	59.39	66.92
Os08t0204800-01	Rice	cytosol	60.07	66.67
TraesCS7B01G364500.1	Wheat	cytosol	60.07	66.67
TraesCS7D01G452100.1	Wheat	cytosol	60.07	66.67
TraesCS7B01G365000.1	Wheat	cytosol	59.73	66.54
TraesCS7A01G464000.1	Wheat	cytosol	59.73	66.29
HORVU7Hr1G106630.1	Barley	cytosol	59.39	65.91
HORVU7Hr1G106500.1	Barley	nucleus	59.39	65.91
TraesCS7D01G451600.1	Wheat	cytosol	59.39	65.91
EES14698	Sorghum	cytosol	58.7	64.66
GSMUA_Achr3P29180_001	Banana	nucleus	62.46	64.44
Zm00001d024292_P002	Maize	cytosol	59.04	63.14
GSMUA_Achr5P14990_001	Banana	plasma membrane	48.46	52.79

Protein Annotations

EnsemblPlants:Bra022916.1	EnsemblPlants:Bra022916.1-P	EnsemblPlantsGene:Bra022916	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0031023	GO:GO:0051225	InterPro:HAUS2	PANTHER:PTHR16039	PFAM:PF15003
SEG:seg	UniParc:UPI000253FCBE	UniProt:M4E2B6	MapMan:20.1.2.2.2	:	:

Description

AT2G32980 (E=3e-136) | unknown protein

Coordinates

chrA03:+:7734494..7736397

Molecular Weight (calculated)

32428.0 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.588

Length

293 amino acids

Sequence
(BLAST)

001: MSMGSDSTWV GKKPIRRIGG FSDALSIASD LGYAVAPPPS QEESQSLDSS KGDDLIRVLR ELSAVQRKIA DFQVELQGRK DDKNVAHLTH VSEMQKKIET
101: LSRITQILKD VIQNKDRIIA RLQQPYSLDC IPVEAEYQKQ FSELLMKAAS DYGALTASVS DFQWSQNFKE PPSVWGEMLR PVPVALASCT RFFEAMTAMR
201: ESFATLQDLR VGNSAASLPT TPGSNETPHR DSDCVTPPQG RTDSSFDDLA VQATRRQIHD QNEAEGEEDG NGNENAQLDR RLSWPPSVKK SGV

Best Arabidopsis Sequence Match ( AT2G32980.1 )
(BLAST)

001: MSMGGDTTWV GKKPIRRIGG LSDALSIASD LGFAVAPPPS QEELQSFASS NGERGDDLIR VLRELSVVQR KIADLQVELQ GRKDDKNVAH LTHVGEMQKK
101: IETLSRITQI LKDVIQNKDR IIARLQQPYS LDCIPVEAEY QKQFSELLMK AASDYGALTA SVSDFQWSQN FKEPPSVWGE MLRPIPVALA SCTRFFEAMS
201: AMRESFATLQ ELRVGNSAVS LPTTPGGNEM THRDSDCVTP PQGRIESSFD DLAVHKTRRQ NNDQNEEEEE EEEEEDGNNN GNRRLSWPPS VKKSSV

Arabidopsis Description

AUG2AUGMIN subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:O48767]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.