Factsheet for Bra023354.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000872.1-P
Bra016661.1-P
Bra018126.1-P
Bra018539.1-P
Bra025713.1-P
Bra026137.1-P
Bra026767.1-P
Bra036256.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11980.1	Bra016661.1-P	AT1G15385.1	21798944
AT5G11980.1	Bra026137.1-P	AT1G15385.1	21798944
AT5G11980.1	Bra026767.1-P	AT1G15385.1	21798944
AT5G11980.1	Bra025713.1-P	AT1G19180.1	21798944
AT5G11980.1	Bra018126.1-P	AT3G47620.1	21798944
AT5G11980.1	Bra000872.1-P	AT4G02590.1	21798944
AT5G11980.1	Bra018539.1-P	AT4G02590.1	21798944
AT5G11980.1	Bra036256.1-P	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67814	Canola	cytosol	99.65	99.65
AT5G11980.1	Thale cress	cytosol	92.09	92.09
Bra006136.1-P	Field mustard	cytosol, nucleus, peroxisome	94.55	90.27
VIT_04s0008g01350.t01	Wine grape	cytosol	77.5	77.23
KRH69706	Soybean	cytosol	77.68	76.21
PGSC0003DMT400017657	Potato	nucleus	77.15	76.08
Solyc01g087650.2.1	Tomato	plastid	76.45	75.52
KRH07953	Soybean	cytosol	76.63	75.43
EER92716	Sorghum	cytosol	64.5	61.89
Os12t0538300-01	Rice	cytosol	66.08	61.64
TraesCS5B01G101300.1	Wheat	cytosol	65.2	60.92
TraesCS5D01G107800.1	Wheat	cytosol	65.03	60.76
TraesCS5A01G095100.1	Wheat	cytosol	65.03	59.97
HORVU5Hr1G025740.13	Barley	vacuole	65.03	57.28
Zm00001d028871_P001	Maize	nucleus	9.49	49.09
GSMUA_Achr3P32460_001	Banana	extracellular, nucleus, plasma membrane	36.73	48.83
Zm00001d006805_P001	Maize	cytosol, mitochondrion, nucleus	9.31	48.18
Zm00001d053677_P001	Maize	cytosol, mitochondrion, nucleus	9.31	48.18

Protein Annotations

MapMan:22.6.2.8	EnsemblPlantsGene:Bra023354	EnsemblPlants:Bra023354.1	EnsemblPlants:Bra023354.1-P	InterPro:COG8	InterPro:COG8_Metazoal_Plant
InterPro:Cullin_repeat-like_dom_sf	GO:GO:0000139	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006891	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0017119	UniProt:M4E3K2	PFAM:PF04124	PIRSF:PIRSF015415	PANTHER:PTHR21311	SUPFAM:SSF74788
UniParc:UPI00025433AA	SEG:seg	:	:	:	:

Description

AT5G11980 (E=9e-296) | conserved oligomeric Golgi complex component-related / COG complex component-related

Coordinates

chrA02:-:2983193..2986481

Molecular Weight (calculated)

63223.0 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.096

Length

569 amino acids

Sequence
(BLAST)

001: MATEIGEMSP PETTASLLSL ASASQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATMHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFADDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GWVGLDFRGL LPPLFEEAVL NMFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINDDS KDDVTPPSYL
401: MEHPPLAVFI NGVSAALNEL RPCAPLSLKN VIAHELIKGL QAVSDSLLRY NTTRMLRLNE SNLFLSLCRA FVEVVFPHCA TFFGRCYPGG ASIVMDAKSA
501: YEGLSRILAA SSSPEPSNKL AKTISIDATS ASENGVTSQA EEKQVESPNE KEENSPVPLQ IPETTQDES

Best Arabidopsis Sequence Match ( AT5G11980.1 )
(BLAST)

001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES

Arabidopsis Description

Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.