CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EER92157
EER97533
EER98969
EES07255
KXG37359
OQU88567

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11980.1	EER92157	AT1G19180.1	21798944
AT5G11980.1	EER97533	AT1G19180.1	21798944
AT5G11980.1	EER98969	AT1G19180.1	21798944
AT5G11980.1	EER88112	AT3G47620.1	21798944
AT5G11980.1	EES07255	AT3G47620.1	21798944
AT5G11980.1	KXG37359	AT4G02590.1	21798944
AT5G11980.1	OQU88567	AT4G02590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048217_P001	Maize	cytosol	93.93	95.21
Os12t0538300-01	Rice	cytosol	86.34	83.93
TraesCS5B01G101300.1	Wheat	cytosol	83.81	81.61
TraesCS5D01G107800.1	Wheat	cytosol	83.64	81.44
TraesCS5A01G095100.1	Wheat	cytosol	83.64	80.39
HORVU5Hr1G025740.13	Barley	vacuole	83.47	76.63
GSMUA_Achr7P24020_001	Banana	cytosol	69.31	70.5
VIT_04s0008g01350.t01	Wine grape	cytosol	64.25	66.72
PGSC0003DMT400017657	Potato	nucleus	63.58	65.34
Solyc01g087650.2.1	Tomato	plastid	63.41	65.28
AT5G11980.1	Thale cress	cytosol	62.39	65.03
CDY67814	Canola	cytosol	62.23	64.85
KRH69706	Soybean	cytosol	63.41	64.83
CDX91181	Canola	cytosol	62.06	64.56
CDX70438	Canola	cytosol	61.89	64.5
Bra023354.1-P	Field mustard	cytosol	61.89	64.5
CDX78461	Canola	cytosol	60.54	64.45
KRH07953	Soybean	cytosol	62.39	64.01
Bra006136.1-P	Field mustard	cytosol, nucleus, peroxisome	61.38	61.07
CDY04606	Canola	cytosol	7.76	46.94

Protein Annotations

MapMan:22.6.2.8	EntrezGene:8081905	UniProt:C5WUS8	InterPro:COG8	InterPro:COG8_Metazoal_Plant	InterPro:Cullin_repeat-like_dom_sf
EnsemblPlants:EER92716	ProteinID:EER92716	ProteinID:EER92716.1	GO:GO:0000003	GO:GO:0000139	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006891
GO:GO:0007030	GO:GO:0008150	GO:GO:0009506	GO:GO:0009653	GO:GO:0009856	GO:GO:0009860
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0016049	GO:GO:0017119
GO:GO:0030154	GO:GO:0040007	GO:GO:0048193	PFAM:PF04124	PIRSF:PIRSF015415	PANTHER:PTHR21311
EnsemblPlantsGene:SORBI_3001G474400	SUPFAM:SSF74788	unigene:Sbi.1679	UniParc:UPI0001A8295F	RefSeq:XP_002465718.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:74655392..74659806

Molecular Weight (calculated)

65379.3 Da

IEP (calculated)

4.814

GRAVY (calculated)

-0.078

Length

593 amino acids

Sequence
(BLAST)

001: MELLDARHRH TPDSSSSPDA ASDMGLPLAG AAYQPYVSEL LSFSIERLHK EPELLRVDAE RVRRQMQEVA VENYGAFIAA SEALSFVRAQ LESFDGHLEA
101: MIEEIPNLTS GCTEFVESAQ QILEERKLNQ TLLANHTTLL DLLEIPQLMD TCIRNGNYDE ALDLEAFVSK ISKLHPDLPV VQGLAAEVKK TVQSLISQLL
201: QKLRSNIQLP ECLRIVAHLR RIGVFSESEL RLQFLRCREA WLSGILEDLD QRNVYDYLKG MVTCHRVHLF DVVNQYRAIF NNDKSGNDEN YDGGLLFSWA
301: MQQVSNHLTT LQVMLPNITE GGSLSNILEQ CMYCAMGLGL VGLDFRGLLP PIFENAVLNL FSKNMSTAVE NFQVVLDSHR WVPMPSVGFV ANGVVDDTSD
401: DVTPPSVLME HPPLAVFVNG VSAAMNELRP CAPLSLKVVL AQEVVKALHA VSDSLVRYKA MRMLRGNESA LFLSLCQAFI EVAYPYCTAC FGRCYPNGAT
501: LISECQGTFD ALRQLLTVPA RSNSSSIERR QSGGMERRQS GSIERKQSVE STGTAVTDNG LSADGPGLET NDAVATTTPP VEDGVSTHPL ASK

Best Arabidopsis Sequence Match ( AT5G11980.1 )
(BLAST)

001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES

Arabidopsis Description

Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.