Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G107800.1 | Wheat | cytosol | 98.19 | 98.19 |
| TraesCS5A01G095100.1 | Wheat | cytosol | 98.85 | 97.57 |
| HORVU5Hr1G025740.13 | Barley | vacuole | 98.19 | 92.57 |
| Os12t0538300-01 | Rice | cytosol | 86.7 | 86.56 |
| Zm00001d028010_P001 | Maize | cytosol | 81.77 | 84.55 |
| EER92716 | Sorghum | cytosol | 81.61 | 83.81 |
| Zm00001d048217_P001 | Maize | cytosol | 79.8 | 83.08 |
| GSMUA_Achr7P24020_001 | Banana | cytosol | 67.65 | 70.67 |
| VIT_04s0008g01350.t01 | Wine grape | cytosol | 62.56 | 66.72 |
| CDY67814 | Canola | cytosol | 61.25 | 65.55 |
| CDX78461 | Canola | cytosol | 59.93 | 65.53 |
| CDX70438 | Canola | cytosol | 61.08 | 65.38 |
| AT5G11980.1 | Thale cress | cytosol | 61.08 | 65.38 |
| PGSC0003DMT400017657 | Potato | nucleus | 61.9 | 65.34 |
| CDX91181 | Canola | cytosol | 61.08 | 65.26 |
| Bra023354.1-P | Field mustard | cytosol | 60.92 | 65.2 |
| Solyc01g087650.2.1 | Tomato | plastid | 61.58 | 65.1 |
| KRH69706 | Soybean | cytosol | 60.92 | 63.97 |
| KRH07953 | Soybean | cytosol | 59.93 | 63.15 |
| Bra006136.1-P | Field mustard | cytosol, nucleus, peroxisome | 60.92 | 62.25 |
| CDY04606 | Canola | cytosol | 7.22 | 44.9 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G101300.1 | EnsemblPlantsGene:TraesCS5B01G101300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0017119 | InterPro:COG8 | InterPro:COG8_Metazoal_Plant | InterPro:Cullin_repeat-like_dom_sf | PANTHER:PTHR21311 |
| PFAM:PF04124 | PIRSF:PIRSF015415 | SEG:seg | SUPFAM:SSF74788 | MapMan:22.6.2.8 | : |
Description
No Description!
Coordinates
chr5B:-:134136802..134141328
Molecular Weight (calculated)
66485.5 Da
IEP (calculated)
4.833
GRAVY (calculated)
-0.091
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLLDAGHRH SSELPAAGAD MEGASVLPLS GAAYQPYVSE LLSFSIERLH KEPELLRVDG ERVRRQMQEV AVENYAAFIA ASEALSFVRA QLEGFDKHLE
101: ALVEEIPNLT SGCTEFVESA HQILEERKLN QTLLANHSTL LDLLEIPQLM DTCIRNGNYD EALDLEAFVS KISKLHPDLP VIQGLAAEVK KTIQSLISQL
201: LQKLRSNIQL PECLRIVAHL RRIGVFSESE LRLQFLRCRE AWLSGILDDL DQRNVYDYLK GMVSCHRTHL FDVVNQYRAI FNNDKSGSEE NSDGGLLFSW
301: AMHQVSNHLT TLQVMLPNIT EGGSLSNMLE NCMYCAMGLG LVGLDFRCLL PPIFENAVLN LFSKNMSTAV ENFQVVLDSH RWVPMPSIGF VTNGAVDDTS
401: DDVTPPSVLM EHPPLAVFVN GVSAAMNELK PCAPLSLKHV LAQEVVKGLQ AVSDSLVRYN AMRMLRGNES SLFLSLCQAF IEVAYPYCAA CFGRCYPNGG
501: ALITECPSLL DAVSQLPIRS GSGISSIDRK PSGGIERRQS GGIERKQSGG IERRQSGGIE RRQSIESAGT AASENGLVTN GPEPEVTSDA GTTAAPAGAD
601: TQTEAPANA
101: ALVEEIPNLT SGCTEFVESA HQILEERKLN QTLLANHSTL LDLLEIPQLM DTCIRNGNYD EALDLEAFVS KISKLHPDLP VIQGLAAEVK KTIQSLISQL
201: LQKLRSNIQL PECLRIVAHL RRIGVFSESE LRLQFLRCRE AWLSGILDDL DQRNVYDYLK GMVSCHRTHL FDVVNQYRAI FNNDKSGSEE NSDGGLLFSW
301: AMHQVSNHLT TLQVMLPNIT EGGSLSNMLE NCMYCAMGLG LVGLDFRCLL PPIFENAVLN LFSKNMSTAV ENFQVVLDSH RWVPMPSIGF VTNGAVDDTS
401: DDVTPPSVLM EHPPLAVFVN GVSAAMNELK PCAPLSLKHV LAQEVVKGLQ AVSDSLVRYN AMRMLRGNES SLFLSLCQAF IEVAYPYCAA CFGRCYPNGG
501: ALITECPSLL DAVSQLPIRS GSGISSIDRK PSGGIERRQS GGIERKQSGG IERRQSGGIE RRQSIESAGT AASENGLVTN GPEPEVTSDA GTTAAPAGAD
601: TQTEAPANA
001: MAMEVGEMSQ PEATASLLSL ASATQQPYVS ELLSFTLDRL HKEPELLRVD AERIQRQMQE VAVGNYRAFI TAADALLAIR QEVSSIDKHL ESLIGEVPKL
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
101: TSGCTEFIDS AENILEKRKM NQALLANHST LLDLLEIPQL MDTCVRNGNF DEALDLEAFV SKLATLHPKL PVIQALAAEV RQTTQSLLSQ LLQKLRSNIQ
201: LPECLRIIGY LRRIGVFGEY EMRLQFLRCR EAWLTGILED LDQKNAYEYL KGMINCHRMH LFDVVNQYRA IFSDDTSGSE ENYDGGLLFS WAMHQITSHL
301: KTLKIMLPKI TEGGSLSNIL DQCMYCAMGL GGVGLDFRGL LPPLFEEAVL NLFSKNMSTA VENFQLVLDS HRWVPLPSVG FPSSGINEDS KDDVTPPSYL
401: MEHPPLAVFI NGVSSALNEL RPCAPLSLKN VVAHELIKGL QAVSDSLLRY NTTRMLRLSE SNLFLSLCRA FVEVVFPHCA TCFGRCYPGG ATIVMDAKSA
501: YEGLGRILAA SSSQEPSNKS PKVISTDTKD ASENGVASQP EEKQAENPNA KEEDNSPIPL QTPEITPES
Arabidopsis Description
Conserved oligomeric Golgi complex component-related / COG complex component-like protein [Source:UniProtKB/TrEMBL;Acc:Q84K25]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.