Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G219300.2 | Wheat | nucleus | 94.35 | 94.35 |
| TraesCS5A01G212800.1 | Wheat | plastid | 92.61 | 71.96 |
| HORVU5Hr1G062290.6 | Barley | mitochondrion, plastid | 90.87 | 70.85 |
| Os09t0439200-01 | Rice | plastid | 48.26 | 47.84 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 43.04 | 45.41 |
| EER98969 | Sorghum | cytosol | 43.48 | 45.25 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 40.0 | 40.53 |
| GSMUA_Achr10P... | Banana | cytosol | 23.04 | 32.72 |
| TraesCS2B01G195600.1 | Wheat | plastid | 32.61 | 32.47 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 31.3 | 31.86 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 28.26 | 30.52 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 31.74 | 30.29 |
| Solyc07g042170.2.1 | Tomato | cytosol | 28.26 | 30.09 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 34.35 | 29.81 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 31.74 | 29.55 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 32.17 | 29.48 |
| PGSC0003DMT400075155 | Potato | nucleus | 27.39 | 29.3 |
| Bra008172.1-P | Field mustard | nucleus | 28.26 | 27.08 |
| CDY46022 | Canola | nucleus | 27.83 | 26.67 |
| CDX73289 | Canola | cytosol | 20.87 | 25.53 |
| Bra016520.1-P | Field mustard | plastid | 28.7 | 25.48 |
| CDX85865 | Canola | cytosol | 24.78 | 25.45 |
| CDY37269 | Canola | nucleus | 26.52 | 25.42 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 29.57 | 25.37 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 26.52 | 25.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.96 | 25.1 |
| CDY45408 | Canola | cytosol | 26.52 | 24.9 |
| Bra015880.1-P | Field mustard | cytosol | 26.52 | 24.9 |
| CDX96675 | Canola | plastid | 28.26 | 24.71 |
| CDX83781 | Canola | plastid | 28.26 | 24.62 |
| AT1G19180.1 | Thale cress | cytosol | 26.96 | 24.51 |
| AT1G74950.1 | Thale cress | cytosol | 26.52 | 24.5 |
| CDX73127 | Canola | cytosol | 26.09 | 24.49 |
| Bra025713.1-P | Field mustard | plastid | 26.96 | 24.41 |
| CDY26697 | Canola | plastid | 26.52 | 24.11 |
| CDY41023 | Canola | plastid | 26.52 | 24.02 |
| Bra003778.1-P | Field mustard | cytosol | 23.04 | 23.87 |
| Bra031065.1-P | Field mustard | plastid | 28.26 | 23.81 |
| Solyc12g009220.1.1 | Tomato | nucleus | 26.09 | 23.81 |
| CDX68156 | Canola | cytosol | 18.7 | 23.76 |
| TraesCS2B01G534800.1 | Wheat | extracellular | 19.13 | 23.4 |
| PGSC0003DMT400007592 | Potato | nucleus | 25.22 | 22.83 |
| CDX81917 | Canola | plastid | 28.7 | 12.99 |
| CDY21679 | Canola | plastid | 27.83 | 11.74 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G211000.1 | EnsemblPlantsGene:TraesCS5B01G211000 | InterPro:CCT_CS | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF12 | PFAM:PF06200 | PFAM:PF09425 | PFscan:PS51320 | SEG:seg | SMART:SM00979 |
| MapMan:15.5.45 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:381842773..381843878
Molecular Weight (calculated)
23891.3 Da
IEP (calculated)
8.457
GRAVY (calculated)
-0.404
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAGSGGKM GGGEGMAGRA GAGAAWAAKE KTGFAATCSL LSRYMKEKKG GALQGLVGLD MSPPAAVVDE GGAFQPPTTM NLLSGLEEPN AAHVELPLEK
101: SSVGQFLKAT TDNQDAREDA HQLTIFYGGK VVVVDNFPST KVKDLLQMAD GAGDKAGSSS LVQQSPPQPS QNTLPDLPIA RRNSLHRFLE KRKGRIVAKA
201: PYQINSASAA PSKQANGDNS WLGLGQEVTN
101: SSVGQFLKAT TDNQDAREDA HQLTIFYGGK VVVVDNFPST KVKDLLQMAD GAGDKAGSSS LVQQSPPQPS QNTLPDLPIA RRNSLHRFLE KRKGRIVAKA
201: PYQINSASAA PSKQANGDNS WLGLGQEVTN
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.