Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G360400.2 | Wheat | cytosol | 99.1 | 92.77 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 98.38 | 92.26 |
| HORVU3Hr1G085210.2 | Barley | cytosol | 96.59 | 90.57 |
| Os01t0853400-01 | Rice | cytosol | 87.97 | 82.35 |
| Zm00001d012338_P001 | Maize | cytosol | 84.74 | 79.19 |
| Zm00001d042833_P001 | Maize | cytosol | 84.2 | 78.43 |
| EES01769 | Sorghum | cytosol | 83.84 | 78.36 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 80.61 | 75.84 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 66.97 | 63.98 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 63.91 | 63.57 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 66.61 | 61.53 |
| TraesCS4A01G091200.1 | Wheat | cytosol | 63.02 | 59.9 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 61.22 | 57.02 |
| KRG97777 | Soybean | cytosol | 59.43 | 56.1 |
| KRH31107 | Soybean | cytosol | 59.25 | 55.93 |
| KRH14993 | Soybean | cytosol | 55.83 | 54.75 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 16.88 | 54.65 |
| KRH73146 | Soybean | cytosol | 57.09 | 54.45 |
| Solyc05g052620.2.1 | Tomato | cytosol | 58.71 | 54.23 |
| CDY24941 | Canola | cytosol | 56.19 | 53.05 |
| Bra000156.1-P | Field mustard | cytosol | 56.01 | 52.88 |
| AT2G39940.1 | Thale cress | cytosol | 56.01 | 52.7 |
| CDY20501 | Canola | cytosol | 55.48 | 51.33 |
| Bra005000.1-P | Field mustard | cytosol | 55.3 | 51.08 |
| CDX74819 | Canola | cytosol | 54.76 | 50.83 |
| CDX93223 | Canola | cytosol | 53.68 | 50.59 |
| CDY07041 | Canola | cytosol | 53.14 | 50.0 |
| CDX93225 | Canola | cytosol | 53.32 | 50.0 |
| CDY07040 | Canola | cytosol | 53.68 | 49.26 |
| Bra017045.1-P | Field mustard | cytosol | 53.32 | 48.93 |
| Bra017044.1-P | Field mustard | cytosol | 52.78 | 48.68 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 55.83 | 44.24 |
| TraesCS5A01G281100.1 | Wheat | cytosol | 33.39 | 32.69 |
| TraesCS2A01G286200.1 | Wheat | cytosol | 31.78 | 30.84 |
| TraesCS4A01G001800.1 | Wheat | cytosol | 33.57 | 30.76 |
| TraesCS7A01G176200.1 | Wheat | cytosol | 33.21 | 29.65 |
| TraesCS1A01G091300.1 | Wheat | cytosol | 31.06 | 29.22 |
| TraesCS6A01G315300.1 | Wheat | plastid | 31.96 | 27.51 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.7.2.1.1 | Gene3D:3.80.10.10 | InterPro:F-box-like_dom_sf | GO:GO:0002213 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:2000022 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF3 | SMART:SM00367 | SUPFAM:SSF52047 |
| SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS3A01G367500 | EnsemblPlants:TraesCS3A01G367500.1 | : | : | : |
Description
No Description!
Coordinates
chr3A:+:616468781..616471950
Molecular Weight (calculated)
61963.0 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.023
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGEVPEPRR LSRALSFGCG GVPDEALHLV MGYVDAPRDR EAASLVCRRW HRIDALTRKH VTVAFCYAAD PARLLARFPR LESLALKGRP RAAMYGLISD
101: DWGAYAAPWV ARLAAPLECL KALHLRRMTV TDDDVAALIR SRGHMLQELK LDKCSGFSTD ALRLVARSCR SLRTLFLEEC VIADEGGEWL HELAVNNSVL
201: VTLNFYMTEL KVVPADLELL AKNCKSLLSL KISECDLSDL IGFFEAANAL QDFAGGSFNE KLDLQYTFLT TEDHCQLISK CPNLFVLEVR NVIGDRGLEV
301: VGDTCKKLRR LRIERGDDDP GLQEEQGGVS QLGLTAVAVG CRDLEYIAAY VSDITNGALE SIGTFCKNLY DFRLVLLDRQ KQVTDLPLDN GVRALLRSCT
401: KLRRFALYLR PGGLSDTGLD YIGQYSGNIQ YMLLGNVGES DHGLIRFAIG CTNLRKLELR SCCFSEQALS LAVLHMPSLR YIWVQGYKAS PAGLELLLMA
501: RRFWNIEFTP PSPEGLFRMT LEGEPCVDKQ AQVLAYYSLA GQRQDCPDWV TPLHPAA
101: DWGAYAAPWV ARLAAPLECL KALHLRRMTV TDDDVAALIR SRGHMLQELK LDKCSGFSTD ALRLVARSCR SLRTLFLEEC VIADEGGEWL HELAVNNSVL
201: VTLNFYMTEL KVVPADLELL AKNCKSLLSL KISECDLSDL IGFFEAANAL QDFAGGSFNE KLDLQYTFLT TEDHCQLISK CPNLFVLEVR NVIGDRGLEV
301: VGDTCKKLRR LRIERGDDDP GLQEEQGGVS QLGLTAVAVG CRDLEYIAAY VSDITNGALE SIGTFCKNLY DFRLVLLDRQ KQVTDLPLDN GVRALLRSCT
401: KLRRFALYLR PGGLSDTGLD YIGQYSGNIQ YMLLGNVGES DHGLIRFAIG CTNLRKLELR SCCFSEQALS LAVLHMPSLR YIWVQGYKAS PAGLELLLMA
501: RRFWNIEFTP PSPEGLFRMT LEGEPCVDKQ AQVLAYYSLA GQRQDCPDWV TPLHPAA
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.