Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G278400.1 | Wheat | cytosol | 98.65 | 98.65 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 98.31 | 98.31 |
| HORVU1Hr1G073230.1 | Barley | cytosol | 94.43 | 94.59 |
| Os05t0449500-01 | Rice | cytosol | 86.66 | 85.93 |
| EES18318 | Sorghum | cytosol | 85.47 | 84.47 |
| Zm00001d038273_P001 | Maize | cytosol | 83.95 | 82.97 |
| Zm00001d010082_P001 | Maize | cytosol | 83.95 | 82.97 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 79.05 | 78.79 |
| GSMUA_Achr6P33630_001 | Banana | cytosol, mitochondrion, nucleus | 65.03 | 66.04 |
| GSMUA_Achr5P28930_001 | Banana | cytosol | 61.66 | 65.18 |
| GSMUA_Achr9P03690_001 | Banana | cytosol | 65.03 | 63.85 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 60.3 | 60.92 |
| VIT_13s0019g03380.t01 | Wine grape | cytosol | 60.3 | 59.7 |
| KRG97777 | Soybean | cytosol | 58.45 | 58.64 |
| KRH31107 | Soybean | cytosol | 58.28 | 58.47 |
| GSMUA_Achr8P02350_001 | Banana | cytosol | 16.89 | 58.14 |
| KRH14993 | Soybean | cytosol | 54.73 | 57.04 |
| KRH73146 | Soybean | cytosol | 55.91 | 56.68 |
| Bra000156.1-P | Field mustard | cytosol | 55.24 | 55.42 |
| CDY24941 | Canola | cytosol | 55.24 | 55.42 |
| AT2G39940.1 | Thale cress | cytosol | 54.73 | 54.73 |
| Solyc05g052620.2.1 | Tomato | cytosol | 55.74 | 54.73 |
| CDY20501 | Canola | cytosol | 54.56 | 53.65 |
| Bra005000.1-P | Field mustard | cytosol | 54.39 | 53.4 |
| CDX74819 | Canola | cytosol | 54.05 | 53.33 |
| CDX93223 | Canola | cytosol | 52.7 | 52.79 |
| CDX93225 | Canola | cytosol | 52.87 | 52.69 |
| CDY07040 | Canola | cytosol | 53.38 | 52.06 |
| CDY07041 | Canola | cytosol | 52.03 | 52.03 |
| Bra017045.1-P | Field mustard | cytosol | 53.04 | 51.73 |
| Bra017044.1-P | Field mustard | cytosol | 51.69 | 50.66 |
| CDY60996 | Canola | endoplasmic reticulum, golgi | 55.07 | 46.37 |
| TraesCS5B01G280100.1 | Wheat | cytosol | 31.93 | 33.04 |
| TraesCS2B01G302900.1 | Wheat | cytosol | 30.07 | 31.01 |
| TraesCS7B01G081200.1 | Wheat | cytosol | 30.74 | 29.12 |
| TraesCS1B01G119100.1 | Wheat | cytosol, peroxisome, plastid | 28.04 | 28.18 |
| TraesCS6B01G345800.1 | Wheat | plastid | 30.57 | 28.06 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G288100.1 | EnsemblPlantsGene:TraesCS1B01G288100 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009987 |
| GO:GO:2000022 | InterPro:F-box-like_dom_sf | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 |
| PANTHER:PTHR43944:SF3 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:11.7.2.1.1 | : |
Description
No Description!
Coordinates
chr1B:-:501365311..501368449
Molecular Weight (calculated)
65569.5 Da
IEP (calculated)
7.183
GRAVY (calculated)
-0.029
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGEAPEPRR LSRALSLDGS GVPEEALHLV LGYVDDPRDR EAASLACRRW HHIDALTRKH VTVPFCYAVS PARLLARFPR LESLGVKGKP RAAMYGLIPD
101: DWGAYARPWV AELAAPLECL KALHLRRMVV TDDDLAALVR ARGHMLQELK LDKCSGFSTD ALRLVARSCR SLRTLFLEEC TITDNGTVWL HDLAANNPVL
201: VTLNFYLTYL RVEPADLELL ARNCKSLISL KISDCDLSDL IGFFQIATSL QEFAGAEISE QMYGNVKLPS KLCSFGLTFM GTNEMHIIFP FSAVLKKLDL
301: QYSFLTTEDH CQLIAKCPNL LVLAVRNVIG DRGLGVVGDT CKKLQRLRVE RGEDDPGMQE EEGGISQVGL TAIAVGCREL ENIAAYVSDI TNGALESIGT
401: FCKNLHDFRL VLLDRQETIT DLPLDNGARA LLRGCTKLRR FALYLRPGGL SDVGLGYIGQ HSGTIQYMLL GNVGQTDGGL ISFAAGCRNL RKLELRSCCF
501: SERALALAIR QMPSLRYVWV QGYRASQTGR DLMLMARPFW NIEFTPPSTE TAGRLMEDGE PCVDRQAQVL AYYSLSGKRS DYPQSVVPLY PA
101: DWGAYARPWV AELAAPLECL KALHLRRMVV TDDDLAALVR ARGHMLQELK LDKCSGFSTD ALRLVARSCR SLRTLFLEEC TITDNGTVWL HDLAANNPVL
201: VTLNFYLTYL RVEPADLELL ARNCKSLISL KISDCDLSDL IGFFQIATSL QEFAGAEISE QMYGNVKLPS KLCSFGLTFM GTNEMHIIFP FSAVLKKLDL
301: QYSFLTTEDH CQLIAKCPNL LVLAVRNVIG DRGLGVVGDT CKKLQRLRVE RGEDDPGMQE EEGGISQVGL TAIAVGCREL ENIAAYVSDI TNGALESIGT
401: FCKNLHDFRL VLLDRQETIT DLPLDNGARA LLRGCTKLRR FALYLRPGGL SDVGLGYIGQ HSGTIQYMLL GNVGQTDGGL ISFAAGCRNL RKLELRSCCF
501: SERALALAIR QMPSLRYVWV QGYRASQTGR DLMLMARPFW NIEFTPPSTE TAGRLMEDGE PCVDRQAQVL AYYSLSGKRS DYPQSVVPLY PA
001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI
Arabidopsis Description
COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.