Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G294600.1 | Wheat | plastid | 96.74 | 96.3 |
| TraesCS6A01G315300.1 | Wheat | plastid | 96.59 | 96.29 |
| HORVU4Hr1G080360.1 | Barley | cytosol, peroxisome, plastid | 49.92 | 93.88 |
| HORVU6Hr1G077570.1 | Barley | mitochondrion | 90.7 | 93.15 |
| HORVU4Hr1G015730.1 | Barley | cytosol, peroxisome, plastid | 47.91 | 92.52 |
| Os02t0759700-01 | Rice | cytosol | 83.88 | 84.93 |
| EES05842 | Sorghum | plastid | 83.57 | 81.42 |
| Zm00001d052188_P001 | Maize | plastid | 82.79 | 80.18 |
| Zm00001d018126_P001 | Maize | plastid | 82.02 | 79.55 |
| TraesCS7B01G081200.1 | Wheat | cytosol | 76.9 | 79.36 |
| GSMUA_Achr3P06710_001 | Banana | cytosol | 60.78 | 68.41 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 60.93 | 66.16 |
| GSMUA_Achr5P05520_001 | Banana | cytosol | 60.16 | 66.1 |
| KRH62206 | Soybean | cytosol | 57.05 | 63.12 |
| KRH52925 | Soybean | cytosol | 56.74 | 62.35 |
| PGSC0003DMT400005419 | Potato | cytosol | 57.52 | 60.52 |
| CDY03450 | Canola | cytosol | 57.21 | 60.49 |
| Bra013798.1-P | Field mustard | cytosol | 56.74 | 60.3 |
| CDY34286 | Canola | cytosol | 56.9 | 60.26 |
| Solyc04g074980.2.1 | Tomato | cytosol | 58.14 | 60.19 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 56.43 | 59.97 |
| CDY21439 | Canola | cytosol | 56.12 | 59.93 |
| KRH72427 | Soybean | cytosol | 58.45 | 59.84 |
| AT5G49980.1 | Thale cress | nucleus | 57.36 | 59.77 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 57.67 | 59.71 |
| CDX83172 | Canola | cytosol, plastid | 56.12 | 59.64 |
| KRH16819 | Soybean | cytosol | 58.6 | 59.06 |
| TraesCS2B01G302900.1 | Wheat | cytosol | 43.41 | 48.78 |
| TraesCS5B01G280100.1 | Wheat | cytosol | 42.95 | 48.43 |
| TraesCS1B01G119100.1 | Wheat | cytosol, peroxisome, plastid | 42.48 | 46.52 |
| TraesCS1B01G288100.1 | Wheat | cytosol | 28.06 | 30.57 |
| TraesCS3B01G399200.1 | Wheat | cytosol | 28.06 | 30.47 |
| TraesCS4B01G213500.1 | Wheat | cytosol | 27.6 | 30.38 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G345800.1 | EnsemblPlantsGene:TraesCS6B01G345800 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF8 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 |
| MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:609380436..609382910
Molecular Weight (calculated)
70653.6 Da
IEP (calculated)
5.235
GRAVY (calculated)
-0.049
Length
645 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAPPSSPSP APIPQPAVTL APAGMRDAAE DTDSPPSQMS EDDGDDSSGS GGPGGGDRWA PDLRGCSNGG RWAPPDQVLE NVLESVLEFL TAARDRNAAS
101: LVCRSWYRAE AQTRRELFIG NCYAVSPRRA VERFGGVRAV VLKGKPRFAD FSLVPHGWGA NVSPWVAALG PAYPRLERIC LKRMTVSDDE LALIPRSFPL
201: FKELSLVCCD GFTTRGLAVI AEGCRHLRVL DLTEDYFHEE ESEVVDWISK FPECNTSLES LVFDCVSVPF NFEALEALVA RSPALRRLRV NDHVSIEQLR
301: RLMARAPHLT HLGTGSFRSE PGPGGALSVS ELATSFAASR SLVCLSGFLD ANAAYLPAIY QVCANLTSLN FSFAGLTAEE FIPVIRHCVN LRTLWVLDTV
401: GDEGLRAVAE TCSNLRELRV FPLDATEDSE GSVSDIGLQA ISEGCRMLES ILYFCQRMTN AAVIAMSENC PDLLVFRLCI MGRHRPDRIT GAPMDEGFGA
501: IVMNCKKLTR LSVSGLLTDK AFAYIGRHGK LIKTLSVAFA GNSDMSLQHV FEGCTRLQKL EVRDSPFGDK GLLSGLNYFY NMRFFWMNSC RLTVKGCGDV
601: AQQMPNLVVE VMKENEGEMD TVDKLYLYRS LAGPREDAPS FVNIL
101: LVCRSWYRAE AQTRRELFIG NCYAVSPRRA VERFGGVRAV VLKGKPRFAD FSLVPHGWGA NVSPWVAALG PAYPRLERIC LKRMTVSDDE LALIPRSFPL
201: FKELSLVCCD GFTTRGLAVI AEGCRHLRVL DLTEDYFHEE ESEVVDWISK FPECNTSLES LVFDCVSVPF NFEALEALVA RSPALRRLRV NDHVSIEQLR
301: RLMARAPHLT HLGTGSFRSE PGPGGALSVS ELATSFAASR SLVCLSGFLD ANAAYLPAIY QVCANLTSLN FSFAGLTAEE FIPVIRHCVN LRTLWVLDTV
401: GDEGLRAVAE TCSNLRELRV FPLDATEDSE GSVSDIGLQA ISEGCRMLES ILYFCQRMTN AAVIAMSENC PDLLVFRLCI MGRHRPDRIT GAPMDEGFGA
501: IVMNCKKLTR LSVSGLLTDK AFAYIGRHGK LIKTLSVAFA GNSDMSLQHV FEGCTRLQKL EVRDSPFGDK GLLSGLNYFY NMRFFWMNSC RLTVKGCGDV
601: AQQMPNLVVE VMKENEGEMD TVDKLYLYRS LAGPREDAPS FVNIL
001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
Arabidopsis Description
AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.