Factsheet for GSMUA_Achr3P06710_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24390.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT4G24390.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT4G24390.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P05520_001	Banana	cytosol	85.34	83.3
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	41.88	69.97
GSMUA_Achr7P11780_001	Banana	cytosol	71.38	69.32
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	40.14	68.86
VIT_18s0001g07120.t01	Wine grape	cytosol	68.06	65.66
Os02t0759700-01	Rice	cytosol	70.16	63.11
HORVU6Hr1G077570.1	Barley	mitochondrion	67.89	61.94
EES05842	Sorghum	plastid	70.51	61.03
TraesCS7B01G081200.1	Wheat	cytosol	66.32	60.8
TraesCS6B01G345800.1	Wheat	plastid	68.41	60.78
Zm00001d052188_P001	Maize	plastid	70.51	60.66
TraesCS7D01G177500.1	Wheat	cytosol, plastid	66.49	60.57
Zm00001d018126_P001	Maize	plastid	70.16	60.45
TraesCS6A01G315300.1	Wheat	plastid	68.24	60.43
TraesCS7A01G176200.1	Wheat	cytosol	65.79	60.42
TraesCS6D01G294600.1	Wheat	plastid	68.06	60.19
KRH52925	Soybean	cytosol	61.61	60.14
KRH62206	Soybean	cytosol	60.91	59.86
Bra013798.1-P	Field mustard	cytosol	62.13	58.65
CDY34286	Canola	cytosol	62.3	58.62
CDY03450	Canola	cytosol	62.13	58.36
CDY21439	Canola	cytosol	61.26	58.11
PGSC0003DMT400005419	Potato	cytosol	62.13	58.08
Solyc04g074980.2.1	Tomato	cytosol	63.0	57.95
CDX83172	Canola	cytosol, plastid	61.26	57.83
Bra000604.1-P	Field mustard	cytosol, plastid	61.26	57.83
AT4G24390.1	Thale cress	cytosol, plastid	62.83	57.78
KRH72427	Soybean	cytosol	63.53	57.78
AT5G49980.1	Thale cress	nucleus	61.78	57.19
KRH16819	Soybean	cytosol	63.35	56.72
GSMUA_Achr6P08000_001	Banana	cytosol	47.64	51.22
GSMUA_AchrUn_...	Banana	cytosol	47.29	50.84
GSMUA_Achr9P01140_001	Banana	cytosol	47.12	50.66
GSMUA_Achr10P...	Banana	cytosol	46.42	49.91
GSMUA_Achr5P26930_001	Banana	cytosol	40.14	49.57
GSMUA_Achr6P16510_001	Banana	cytosol	45.2	48.59
GSMUA_Achr6P20580_001	Banana	cytosol	41.88	48.0
GSMUA_Achr3P23850_001	Banana	cytosol	45.9	45.19
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	27.4	26.93
GSMUA_Achr9P03690_001	Banana	cytosol	28.27	26.87
GSMUA_Achr5P28930_001	Banana	cytosol	25.65	26.25
GSMUA_Achr8P02350_001	Banana	cytosol	6.98	23.26

Protein Annotations

EnsemblPlants:GSMUA_Achr3P06710_001	EnsemblPlants:GSMUA_Achr3T06710_001	EnsemblPlantsGene:GSMUA_Achr3G06710_001	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
ncoils:Coil	PANTHER:PTHR43944	PANTHER:PTHR43944:SF8	SEG:seg	SUPFAM:SSF52047	UniParc:UPI0002965732
UniProt:M0SCD8	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:	:

Description

Transport inhibitor response 1-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G06710_001]

Coordinates

chr3:+:4515141..4517927

Molecular Weight (calculated)

64076.1 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.092

Length

573 amino acids

Sequence
(BLAST)

001: MREERSDMSE DEDGGGEEKD SWAPGLGVAG KSRGAPDPLP PPLCDQVLEN VLENVLQFLT FRRDRNAVSL GKPRFADFGL VPIGWGAHFS PWASAMAAGY
101: PWLEKICLKR MSVTDDDLSL LALSFPFFKG LTLICCDGFG TAGLAVFAEK CRHLRLLDLI EDYFEEEEYE VVDWISKFPE TTTSLETLGF DCLPSAVNFE
201: ALEALIARSP ALRQLRVNHH VTVDQLRRLM VRAPQLTHLG TGSFRSPEEG EGMEHEAHLV SAFAASRSLV SLSGFREVAS QFLPAIYPVC SNITFLNFSF
301: AEITAEELKP VIRHCHNLQN FWVLDTVRDE GLQAVAATCK DLRELRVFPL DATEDSEGFV SDVGLTAISE GCRKLQSILY FCQRMTNKAV LTMSKNCQEL
401: VVFRLCIMAR HLPDHHTGEP MDEGFGAIVM NCKKLTRLAV SGLLTDKAFG YIGKFGKSIR TLSVAFAGNS DMGLRYVLEG CPKLQKLEIR DSPFGDPALL
501: SGIHHYYNMR FLWMSSCKLS HRGCEDVAQR LPRLAVEVIR DRPEAEDEAV EKLYMYRSLV GRRNDAPPFV KIL

Best Arabidopsis Sequence Match ( AT5G49980.1 )
(BLAST)

001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL

Arabidopsis Description

AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.