Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G176200.1 | Wheat | cytosol | 97.14 | 97.92 |
| TraesCS7B01G081200.1 | Wheat | cytosol | 97.14 | 97.76 |
| TraesCS6D01G294600.1 | Wheat | plastid | 78.06 | 75.77 |
| GSMUA_Achr3P06710_001 | Banana | cytosol | 60.57 | 66.49 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 62.48 | 66.16 |
| GSMUA_Achr5P05520_001 | Banana | cytosol | 60.73 | 65.08 |
| KRH62206 | Soybean | cytosol | 58.98 | 63.64 |
| KRH52925 | Soybean | cytosol | 58.66 | 62.86 |
| PGSC0003DMT400005419 | Potato | cytosol | 60.73 | 62.32 |
| Solyc04g074980.2.1 | Tomato | cytosol | 61.05 | 61.64 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 58.19 | 60.3 |
| CDY21439 | Canola | cytosol | 57.71 | 60.1 |
| CDX83172 | Canola | cytosol, plastid | 57.87 | 59.97 |
| CDY03450 | Canola | cytosol | 57.71 | 59.51 |
| KRH72427 | Soybean | cytosol | 59.46 | 59.37 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 58.66 | 59.23 |
| Bra013798.1-P | Field mustard | cytosol | 57.07 | 59.14 |
| AT5G49980.1 | Thale cress | nucleus | 58.19 | 59.13 |
| CDY34286 | Canola | cytosol | 56.92 | 58.78 |
| KRH16819 | Soybean | cytosol | 59.46 | 58.44 |
| TraesCS4D01G301800.1 | Wheat | cytosol, nucleus, peroxisome | 55.17 | 56.89 |
| TraesCS2D01G285000.1 | Wheat | cytosol | 44.99 | 49.3 |
| TraesCS5D01G288000.1 | Wheat | cytosol | 42.93 | 47.45 |
| TraesCS1D01G099900.1 | Wheat | cytosol | 42.93 | 45.0 |
| TraesCS3D01G360400.2 | Wheat | cytosol | 30.68 | 32.44 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 29.41 | 31.25 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 28.62 | 30.72 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G177500.1 | EnsemblPlantsGene:TraesCS7D01G177500 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 |
| PANTHER:PTHR43944:SF8 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:11.2.2.1.1 |
| MapMan:19.2.2.8.1.4.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:130113317..130116235
Molecular Weight (calculated)
69003.5 Da
IEP (calculated)
5.083
GRAVY (calculated)
-0.108
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAAEEADS PPTHMSEDSP GSSSSGGSGG GRRTPDLRGG DNGGGPRASS SSSSAPPDQV LDNVLESVLE FLTAARDRNA ASLVCRSWYR AEAQTRRELF
101: IGNCYAVDPR RAVARFRAVA AVVLKGKPRF ADFSLLPDGW GANVKPWLEA LGPAYPCLER ICLKRMTVTD DDLGLVARSF PGFQELSLVC CDGFSTLGLA
201: VIAERCRHLR VLDLIEDYVD QEDEAVDWIS KFPVSNTSLE SLMFDCVGAP FNFEALEALV ARSPSLRRLR VNHHVSVEQL RRLMARAPQL THLGTGAFRP
301: EAPQGEGMSV SELAPSFAAS TSIVCLSGFQ EVNPEYLPAI YPVCGNLTSL NVSFASLTAE DLTPVIRQCH KLQTFWVLDT VGDEGLRAVA ETCSDLRELR
401: VFPLDATEDS DGSVSDVGLQ AISEGCRKLE SILYFCQRMT NAAVVAMSNN CPDLVVFRLC IMGRHRPDRI TGEPMDDGFG AIVKNCKKLT RLSVSGLLTD
501: KAFAYIGQYG KLIKTLSLAF SGNSDLSLQF LFEGCTRLQK LEVRDSPFSD RGLLCGLDYF YNMRFLWMNS CRLTMRGCRE VAQRMPNLVV EVMEEQNEDK
601: VETETVDKLY LYRSLAGPRG DAPPLVKIL
101: IGNCYAVDPR RAVARFRAVA AVVLKGKPRF ADFSLLPDGW GANVKPWLEA LGPAYPCLER ICLKRMTVTD DDLGLVARSF PGFQELSLVC CDGFSTLGLA
201: VIAERCRHLR VLDLIEDYVD QEDEAVDWIS KFPVSNTSLE SLMFDCVGAP FNFEALEALV ARSPSLRRLR VNHHVSVEQL RRLMARAPQL THLGTGAFRP
301: EAPQGEGMSV SELAPSFAAS TSIVCLSGFQ EVNPEYLPAI YPVCGNLTSL NVSFASLTAE DLTPVIRQCH KLQTFWVLDT VGDEGLRAVA ETCSDLRELR
401: VFPLDATEDS DGSVSDVGLQ AISEGCRKLE SILYFCQRMT NAAVVAMSNN CPDLVVFRLC IMGRHRPDRI TGEPMDDGFG AIVKNCKKLT RLSVSGLLTD
501: KAFAYIGQYG KLIKTLSLAF SGNSDLSLQF LFEGCTRLQK LEVRDSPFSD RGLLCGLDYF YNMRFLWMNS CRLTMRGCRE VAQRMPNLVV EVMEEQNEDK
601: VETETVDKLY LYRSLAGPRG DAPPLVKIL
001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
Arabidopsis Description
AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.