Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G091300.1 | Wheat | cytosol | 98.0 | 99.32 |
| TraesCS1B01G119100.1 | Wheat | cytosol, peroxisome, plastid | 96.83 | 98.64 |
| Os05t0150500-00 | Rice | plastid | 88.17 | 90.12 |
| HORVU1Hr1G021550.4 | Barley | cytosol | 93.83 | 87.69 |
| KXG21312 | Sorghum | plastid | 85.67 | 86.97 |
| Zm00001d010863_P001 | Maize | plastid | 84.5 | 85.93 |
| GSMUA_Achr5P26930_001 | Banana | cytosol | 55.17 | 71.34 |
| GSMUA_Achr3P23850_001 | Banana | cytosol | 68.33 | 70.45 |
| Solyc06g008470.1.1 | Tomato | extracellular | 6.5 | 68.42 |
| PGSC0003DMT400093216 | Potato | mitochondrion | 16.0 | 62.75 |
| Solyc06g008440.1.1 | Tomato | extracellular | 6.67 | 62.5 |
| VIT_07s0104g01320.t01 | Wine grape | cytosol | 59.5 | 61.98 |
| KRG96377 | Soybean | cytosol | 60.0 | 61.33 |
| PGSC0003DMT400029517 | Potato | cytosol | 59.33 | 61.27 |
| Solyc09g074520.2.1 | Tomato | cytosol | 59.33 | 61.27 |
| KRH71533 | Soybean | cytosol | 59.33 | 60.85 |
| KRH31921 | Soybean | cytosol | 59.17 | 60.68 |
| VIT_14s0030g01240.t01 | Wine grape | cytosol | 58.67 | 60.59 |
| KRH68108 | Soybean | cytosol | 59.17 | 60.58 |
| PGSC0003DMT400053430 | Potato | cytosol | 27.0 | 60.22 |
| CDY53998 | Canola | cytosol | 58.33 | 59.93 |
| CDY68868 | Canola | cytosol | 53.83 | 59.81 |
| CDY53774 | Canola | cytosol | 57.33 | 58.7 |
| Bra000842.1-P | Field mustard | cytosol | 57.33 | 58.7 |
| Bra034191.1-P | Field mustard | cytosol | 57.17 | 58.63 |
| PGSC0003DMT400061752 | Potato | plastid | 56.67 | 58.62 |
| Bra003518.1-P | Field mustard | cytosol | 58.0 | 58.59 |
| AT4G03190.1 | Thale cress | cytosol, plastid | 57.0 | 58.46 |
| AT3G62980.1 | Thale cress | cytosol | 57.67 | 58.25 |
| CDX90899 | Canola | cytosol | 56.83 | 58.19 |
| CDY11468 | Canola | cytosol | 57.17 | 57.65 |
| Bra007720.1-P | Field mustard | cytosol | 57.17 | 57.65 |
| PGSC0003DMT400056570 | Potato | cytosol | 57.0 | 57.58 |
| CDX76680 | Canola | cytosol | 57.0 | 57.48 |
| VIT_12s0035g00130.t01 | Wine grape | cytosol, extracellular, nucleus | 14.0 | 57.14 |
| Solyc06g008460.1.1 | Tomato | extracellular | 22.5 | 56.96 |
| TraesCS2D01G285000.1 | Wheat | cytosol | 53.33 | 55.75 |
| Solyc06g008810.2.1 | Tomato | cytosol | 38.83 | 55.34 |
| CDY21947 | Canola | plastid, vacuole | 56.83 | 54.47 |
| PGSC0003DMT400008765 | Potato | cytosol | 9.67 | 54.21 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 58.0 | 53.95 |
| CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 57.17 | 53.68 |
| PGSC0003DMT400013682 | Potato | cytosol, mitochondrion | 12.5 | 53.57 |
| TraesCS5D01G288000.1 | Wheat | cytosol | 50.33 | 53.08 |
| Bra014378.1-P | Field mustard | cytosol | 51.67 | 49.52 |
| CDX89163 | Canola | cytosol | 51.67 | 49.52 |
| Solyc06g007840.2.1 | Tomato | extracellular, plastid | 6.67 | 48.78 |
| Solyc06g008780.1.1 | Tomato | extracellular | 39.33 | 47.58 |
| Solyc05g009260.1.1 | Tomato | extracellular | 6.17 | 45.68 |
| TraesCS7D01G177500.1 | Wheat | cytosol, plastid | 45.0 | 42.93 |
| TraesCS6D01G294600.1 | Wheat | plastid | 46.17 | 42.75 |
| TraesCS4D01G301800.1 | Wheat | cytosol, nucleus, peroxisome | 43.17 | 42.46 |
| Solyc06g007830.1.1 | Tomato | endoplasmic reticulum, extracellular | 7.33 | 38.6 |
| Solyc06g084490.1.1 | Tomato | plastid | 11.5 | 32.86 |
| TraesCS4D01G214200.1 | Wheat | cytosol | 29.17 | 29.86 |
| TraesCS3D01G360400.2 | Wheat | cytosol | 29.17 | 29.41 |
| TraesCS1D01G278400.1 | Wheat | cytosol | 27.83 | 28.21 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G099900.1 | EnsemblPlantsGene:TraesCS1D01G099900 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF7 | PFAM:PF00646 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:87091601..87096214
Molecular Weight (calculated)
65426.8 Da
IEP (calculated)
6.319
GRAVY (calculated)
0.038
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGGARDGA APMGRGGARD GAAAAPPWHS LPDEVLEHAF SFLPAAADRG AAAAVCHGWL GAERRSRRRL AVANCYAAAP RDAVDRFPSV RAAEVKGKPH
101: FADFGLVPPA WGAEAAPWVA AAADGWPLLE ELSFKRMVVT DECLEMIASS FRNFQVLRLV SCEGFSTAGL AAITEGCRNL RELDLQENYI EDCSSHWLSY
201: FPESFTSLET LNFSCLEGEV NFAVLERLVS RCRNLKTLKL NNAIPLDKVA SLLRKAPQLV ELGTGKFSAE YHSDLFAKLE AAFAGCKSLR RLSGAWDAVP
301: DYLPAFYCVC EGLTSLNLSY ATVRGPELIK FISRCKNLQQ LWVMDLIEDH GLAVVAGSCS KLQELRVFPS DPFGAGQVLL TERGLVDVSA SCPMLESVLY
401: FCGQMTNEAL ITIAKNRPNF TCFRLCILEP RTPDYVTRES LDAGFSAIVE SCKGLRRLSV SGLLTDLVFK SIGANGNCLE MLSIAFAGNS DLGLHYILSG
501: CKTLKKLEIR DCPFGNKPLL ANAAKLETMR SLWMSSCSLT LGACRQLAEK MPRLTVEIMN DPGRTCPVES LPDDSPVETL YVYRTIAGPR SDTPDYVQIV
101: FADFGLVPPA WGAEAAPWVA AAADGWPLLE ELSFKRMVVT DECLEMIASS FRNFQVLRLV SCEGFSTAGL AAITEGCRNL RELDLQENYI EDCSSHWLSY
201: FPESFTSLET LNFSCLEGEV NFAVLERLVS RCRNLKTLKL NNAIPLDKVA SLLRKAPQLV ELGTGKFSAE YHSDLFAKLE AAFAGCKSLR RLSGAWDAVP
301: DYLPAFYCVC EGLTSLNLSY ATVRGPELIK FISRCKNLQQ LWVMDLIEDH GLAVVAGSCS KLQELRVFPS DPFGAGQVLL TERGLVDVSA SCPMLESVLY
401: FCGQMTNEAL ITIAKNRPNF TCFRLCILEP RTPDYVTRES LDAGFSAIVE SCKGLRRLSV SGLLTDLVFK SIGANGNCLE MLSIAFAGNS DLGLHYILSG
501: CKTLKKLEIR DCPFGNKPLL ANAAKLETMR SLWMSSCSLT LGACRQLAEK MPRLTVEIMN DPGRTCPVES LPDDSPVETL YVYRTIAGPR SDTPDYVQIV
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Arabidopsis Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.