Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 95.6 | 97.31 |
| TraesCS3B01G310500.1 | Wheat | cytosol, mitochondrion, nucleus | 93.84 | 93.29 |
| HORVU3Hr1G070620.5 | Barley | cytosol, mitochondrion, nucleus | 86.8 | 83.85 |
| Os01t0741900-01 | Rice | nucleus | 70.38 | 71.64 |
| KXG33336 | Sorghum | nucleus | 63.34 | 59.18 |
| Zm00001d043515_P002 | Maize | cytosol, mitochondrion, nucleus | 61.29 | 58.54 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 46.04 | 53.4 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 32.55 | 49.33 |
| CDX87072 | Canola | cytosol | 23.75 | 46.29 |
| AT5G25890.1 | Thale cress | nucleus | 23.75 | 46.29 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 23.46 | 45.98 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 23.46 | 45.98 |
| Bra036557.1-P | Field mustard | nucleus | 23.46 | 45.71 |
| Bra009867.1-P | Field mustard | cytosol | 23.46 | 45.45 |
| Solyc03g121060.2.1 | Tomato | nucleus | 38.12 | 45.3 |
| PGSC0003DMT400006709 | Potato | nucleus | 37.24 | 44.88 |
| KRH09948 | Soybean | nucleus | 41.35 | 44.06 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 42.23 | 41.74 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 9.97 | 41.46 |
| AT3G16500.1 | Thale cress | nucleus | 32.55 | 41.26 |
| CDY19790 | Canola | cytosol | 23.46 | 41.03 |
| CDX87863 | Canola | nucleus | 30.5 | 40.94 |
| AT1G51950.1 | Thale cress | nucleus | 31.96 | 40.82 |
| CDY64626 | Canola | cytosol | 31.96 | 40.52 |
| Bra021184.1-P | Field mustard | nucleus | 31.96 | 40.52 |
| CDY34957 | Canola | nucleus | 31.96 | 40.52 |
| CDY46538 | Canola | nucleus | 31.96 | 40.37 |
| Bra014303.1-P | Field mustard | nucleus | 31.96 | 40.37 |
| KRH23388 | Soybean | nucleus | 40.76 | 40.17 |
| CDX75884 | Canola | cytosol | 31.38 | 39.48 |
| CDX82399 | Canola | nucleus | 31.38 | 39.34 |
| Bra001634.1-P | Field mustard | nucleus | 31.38 | 39.34 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.48 | 39.29 |
| CDY22876 | Canola | nucleus | 29.03 | 39.13 |
| KRH47203 | Soybean | nucleus | 36.36 | 39.12 |
| KRH44271 | Soybean | nucleus | 35.78 | 38.98 |
| CDY43104 | Canola | nucleus | 30.5 | 38.95 |
| CDY53439 | Canola | nucleus | 31.09 | 38.83 |
| Bra018938.1-P | Field mustard | nucleus | 28.74 | 38.74 |
| CDY33844 | Canola | nucleus | 28.45 | 38.34 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 27.86 | 37.7 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 39.88 | 37.06 |
| Bra022164.1-P | Field mustard | nucleus | 30.79 | 36.84 |
| CDX92077 | Canola | nucleus | 30.79 | 36.84 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 41.94 | 32.57 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 15.54 | 30.29 |
| TraesCS7A01G322000.1 | Wheat | nucleus | 20.82 | 26.3 |
| TraesCS6A01G392600.3 | Wheat | cytosol, nucleus, plastid | 21.41 | 25.61 |
| TraesCS4A01G204900.1 | Wheat | nucleus | 20.23 | 19.11 |
| TraesCS1A01G082700.2 | Wheat | plastid | 12.61 | 16.35 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF90 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS3A01G276500 | EnsemblPlants:TraesCS3A01G276500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:-:506441804..506443865
Molecular Weight (calculated)
36761.4 Da
IEP (calculated)
7.026
GRAVY (calculated)
-0.646
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MEESSMKREA MPRLLDLIPD EKEWSLRGGA PGQGRSKNTG FGSDEDEKLE LKLGLPGLVQ EEPAASSREK SVHQESPALS LGYPPRHSTA TTTTTTTGAK
101: RGFLDTVEAK AQGYEKEQAR AAACGKELAM EEENTEAVGE RKKGCCPPPP PAHAPPATPA RNIGNRPQAR GRGAAAPVVG WPPIRSFRRN LASTSASKQP
201: PEPQIGEADA KAVLDCKKSP LVKINMDGIP IGRKVDLAAC DSYGRLSLAV KDLFHGFLQV QRDPSKVDRT QQGADEKIFS QLLDGSGEYT LVYEDSEGDR
301: MLVGDVPWNV FVSTAKRLRV LRSSELSHDL IGATPERAAN G
101: RGFLDTVEAK AQGYEKEQAR AAACGKELAM EEENTEAVGE RKKGCCPPPP PAHAPPATPA RNIGNRPQAR GRGAAAPVVG WPPIRSFRRN LASTSASKQP
201: PEPQIGEADA KAVLDCKKSP LVKINMDGIP IGRKVDLAAC DSYGRLSLAV KDLFHGFLQV QRDPSKVDRT QQGADEKIFS QLLDGSGEYT LVYEDSEGDR
301: MLVGDVPWNV FVSTAKRLRV LRSSELSHDL IGATPERAAN G
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
Arabidopsis Description
IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.