Factsheet for TraesCS6A01G392600.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G432800.1	Wheat	nucleus	91.58	94.22
TraesCS6D01G378300.1	Wheat	cytosol, nucleus, plastid	91.93	92.58
HORVU6Hr1G091260.3	Barley	nucleus	86.67	87.9
Os02t0817600-02	Rice	nucleus	75.09	76.16
KXG31359	Sorghum	cytosol, nucleus, peroxisome	72.28	69.59
Zm00001d051911_P002	Maize	nucleus	70.88	68.71
TraesCS7A01G129000.1	Wheat	nucleus	14.04	48.78
GSMUA_Achr11P...	Banana	nucleus	41.05	39.0
TraesCS6A01G373300.1	Wheat	cytosol, nucleus, plastid	22.46	36.57
TraesCS1A01G122600.2	Wheat	nucleus	24.21	30.67
TraesCS3A01G108400.1	Wheat	cytosol, nucleus, peroxisome	22.11	25.0
TraesCS7A01G322000.1	Wheat	nucleus	22.11	23.33
TraesCS1A01G343300.1	Wheat	nucleus	22.81	22.11
TraesCS3A01G276500.1	Wheat	cytosol, mitochondrion, nucleus	25.61	21.41
TraesCS1A01G082700.2	Wheat	plastid	17.89	19.39
TraesCS4A01G204900.1	Wheat	nucleus	21.75	17.17

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR000270
InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF6	SUPFAM:SSF54277
EnsemblPlantsGene:TraesCS6A01G392600	EnsemblPlants:TraesCS6A01G392600.3	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:+:606983238..606985162

Molecular Weight (calculated)

30139.4 Da

IEP (calculated)

5.499

GRAVY (calculated)

-0.529

Length

285 amino acids

Sequence
(BLAST)

001: MRGPGGGVGP AAAAFGPGEP PPAAEEVVEE NSGGEEEEED GLELGLYLGS RKQQLPVTPA PCRILTARDL QPAAALSPDS SVSSSSPAAA KPEEGPAPAA
101: SPGILASGHP QSSFGVVGWP PIRTFRMNSL FGQAKDNASD AETKKAAADE SGSRKDKEEG EKKGRVPGWV KVNMDGEVIG RKVDLNAHRS YKTLALALEI
201: MFTKPSAGLC ASNSTKSLKL LENSCEYQMT YEDRDGDWML VGDVPWEMFV GSVKRLRIMR TSDASGLGPR FQANHRTAAS TRGRS

Best Arabidopsis Sequence Match ( AT2G33310.2 )
(BLAST)

001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSSQVVGW PPIGSHRMNS LVNNQATKSA
101: REEEEAGKKK VKDDEPKDVT KKVNGKVQVG FIKVNMDGVA IGRKVDLNAH SSYENLAQTL EDMFFRTNPG TVGLTSQFTK PLRLLDGSSE FVLTYEDKEG
201: DWMLVGDVPW RMFINSVKRL RVMKTSEANG LAARNQEPNE RQRKQPV

Arabidopsis Description

IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.