Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400052767 | Potato | cytosol, extracellular, nucleus | 43.9 | 39.56 |
| GSMUA_Achr9P26900_001 | Banana | plastid | 57.32 | 39.5 |
| HORVU7Hr1G026970.2 | Barley | cytosol | 79.27 | 38.69 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 74.39 | 38.61 |
| GSMUA_Achr9P26910_001 | Banana | nucleus | 59.76 | 33.79 |
| Os06t0166500-01 | Rice | nucleus | 58.54 | 26.23 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 54.88 | 25.71 |
| Zm00001d000288_P001 | Maize | cytosol | 58.54 | 24.37 |
| KXG19391 | Sorghum | nucleus | 58.54 | 23.53 |
| Zm00001d045203_P001 | Maize | cytosol | 60.98 | 23.15 |
| VIT_11s0016g05640.t01 | Wine grape | cytosol | 46.34 | 20.65 |
| KRH20139 | Soybean | nucleus | 45.12 | 17.96 |
| KRH03666 | Soybean | cytosol | 42.68 | 17.59 |
| Solyc07g008020.2.1 | Tomato | cytosol | 41.46 | 17.35 |
| PGSC0003DMT400079375 | Potato | cytosol | 42.68 | 17.33 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 45.12 | 16.44 |
| Solyc06g066020.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 43.9 | 14.88 |
| PGSC0003DMT400035770 | Potato | cytosol | 39.02 | 14.61 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 43.9 | 14.29 |
| Solyc08g021820.2.1 | Tomato | nucleus | 39.02 | 14.1 |
| TraesCS6A01G392600.3 | Wheat | cytosol, nucleus, plastid | 48.78 | 14.04 |
| KRH52428 | Soybean | nucleus | 36.59 | 13.22 |
| VIT_04s0008g05560.t01 | Wine grape | extracellular | 36.59 | 13.22 |
| TraesCS1A01G082700.2 | Wheat | plastid | 41.46 | 12.93 |
| KRH61758 | Soybean | nucleus | 35.37 | 12.83 |
| TraesCS7A01G322000.1 | Wheat | nucleus | 41.46 | 12.59 |
| CDY13478 | Canola | nucleus | 35.37 | 11.93 |
| Bra023958.1-P | Field mustard | nucleus | 35.37 | 11.93 |
| CDX68829 | Canola | nucleus | 32.93 | 11.84 |
| CDX72351 | Canola | nucleus | 35.37 | 11.74 |
| Bra011332.1-P | Field mustard | nucleus | 32.93 | 11.69 |
| CDX75231 | Canola | nucleus | 32.93 | 11.69 |
| TraesCS1A01G343300.1 | Wheat | nucleus | 40.24 | 11.22 |
| AT4G32280.1 | Thale cress | cytosol | 34.15 | 11.16 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 41.46 | 9.97 |
| TraesCS4A01G204900.1 | Wheat | nucleus | 39.02 | 8.86 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF38 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS7A01G129000 | EnsemblPlants:TraesCS7A01G129000.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:83106019..83106365
Molecular Weight (calculated)
9184.9 Da
IEP (calculated)
6.628
GRAVY (calculated)
-0.483
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MEGVPIGRKV DLSRHASYHQ LHHTLRLMFP SSASHHGDPY AVAYEDGDGD WMLVGDVPWE DFSQSAKRLK ILMQPTTHGI TG
001: MITELEMGKG ESELELGLGL SLGGGTAAKI GKSGGGGAWG ERGRLLTAKD FPSVGSKRAA DSASHAGSSP PRSSQVVGWP PIGSHRMNSL VNNQATKSAR
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
101: EEEEAGKKKV KDDEPKDVTK KVNGKVQVGF IKVNMDGVAI GRKVDLNAHS SYENLAQTLE DMFFRTNPGT VGLTSQFTKP LRLLDGSSEF VLTYEDKEGD
201: WMLVGDVPWR MFINSVKRLR VMKTSEANGL AARNQEPNER QRKQPV
Arabidopsis Description
IAA13Auxin-responsive protein IAA13 [Source:UniProtKB/Swiss-Prot;Acc:Q38831]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.