Factsheet for Bra023958.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002327.1-P
Bra002729.1-P
Bra016517.1-P
Bra020125.1-P
Bra025720.1-P
Bra026755.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32280.1	Bra026755.1-P	AT1G15580.1	21734647
AT4G32280.1	Bra016517.1-P	AT1G19220.1	21734647
AT4G32280.1	Bra025720.1-P	AT1G19220.1	21734647
AT4G32280.1	Bra002327.1-P	AT5G20730.1	21734647
AT4G32280.1	Bra020125.1-P	AT5G20730.1	21734647
AT4G32280.1	Bra002729.1-P	AT5G57420.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13478	Canola	nucleus	100.0	100.0
Bra011332.1-P	Field mustard	nucleus	76.95	80.95
AT4G32280.1	Thale cress	cytosol	75.72	73.31
PGSC0003DMT400052767	Potato	cytosol, extracellular, nucleus	16.05	42.86
TraesCS7D01G128200.1	Wheat	cytosol, mitochondrion	15.64	37.25
KRH61758	Soybean	nucleus	33.74	36.28
TraesCS7A01G129000.1	Wheat	nucleus	11.93	35.37
KRH52428	Soybean	nucleus	32.92	35.24
GSMUA_Achr9P26900_001	Banana	plastid	16.46	33.61
PGSC0003DMT400035770	Potato	cytosol	30.04	33.33
VIT_04s0008g05560.t01	Wine grape	extracellular	30.04	32.16
Solyc08g021820.2.1	Tomato	nucleus	30.04	32.16
Bra021257.1-P	Field mustard	cytosol	9.47	31.94
Solyc06g066020.2.1	Tomato	cytoskeleton, cytosol, nucleus	30.04	30.17
TraesCS7D01G127900.1	Wheat	nucleus	18.52	30.0
GSMUA_Achr9P26910_001	Banana	nucleus	17.7	29.66
TraesCS6D01G357500.1	Wheat	cytosol, mitochondrion, nucleus	20.58	29.07
TraesCS7D01G128100.1	Wheat	nucleus	18.93	28.75
HORVU6Hr1G088140.2	Barley	cytosol, mitochondrion, nucleus	20.58	28.74
TraesCS6A01G373300.1	Wheat	cytosol, nucleus, plastid	20.58	28.57
Os02t0805100-01	Rice	nucleus	21.4	28.57
KXG19391	Sorghum	nucleus	23.87	28.43
TraesCS6B01G411000.1	Wheat	cytosol, mitochondrion, nucleus	20.58	28.25
KXG31308	Sorghum	cytosol	22.22	27.41
TraesCS7B01G029000.1	Wheat	cytosol	19.34	27.33
Bra001670.1-P	Field mustard	nucleus	16.46	27.03
Zm00001d000288_P001	Maize	cytosol	21.81	26.9
HORVU7Hr1G026970.2	Barley	cytosol	18.52	26.79
TraesCS7D01G127800.1	Wheat	cytosol	17.28	26.58
Zm00001d045203_P001	Maize	cytosol	23.46	26.39
Os06t0166500-01	Rice	nucleus	19.75	26.23
TraesCS7B01G029100.1	Wheat	nucleus	18.93	25.99
Bra022224.1-P	Field mustard	nucleus, plastid	16.87	25.95
Zm00001d018414_P001	Maize	nucleus	21.81	25.73
Bra003484.1-P	Field mustard	nucleus, plastid	18.11	25.58
Bra036557.1-P	Field mustard	nucleus	17.7	24.57
Bra040476.1-P	Field mustard	cytosol, plastid	17.28	24.14
Bra007661.1-P	Field mustard	plastid	17.28	23.73
Bra009867.1-P	Field mustard	cytosol	16.46	22.73
Bra015326.1-P	Field mustard	nucleus	21.81	22.55
Bra022934.1-P	Field mustard	nucleus	21.4	21.49
Bra011045.1-P	Field mustard	nucleus	21.4	21.4
Bra005508.1-P	Field mustard	nucleus	21.81	20.87
Bra014411.1-P	Field mustard	nucleus, plastid	10.29	19.84
Bra001634.1-P	Field mustard	nucleus	21.81	19.49
Bra018938.1-P	Field mustard	nucleus	20.16	19.37
Bra015289.1-P	Field mustard	nucleus	20.99	18.82
Bra014303.1-P	Field mustard	nucleus	19.75	17.78
Bra021184.1-P	Field mustard	nucleus	19.34	17.47
Bra022164.1-P	Field mustard	nucleus	18.93	16.14
Bra032503.1-P	Field mustard	nucleus	20.58	16.13
Bra024187.1-P	Field mustard	plastid	21.81	13.32

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra023958	EnsemblPlants:Bra023958.1
EnsemblPlants:Bra023958.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4E5A4	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF44	SUPFAM:SSF54277	UniParc:UPI0002540FEC	SEG:seg	:

Description

AT4G32280 (E=4e-088) IAA29 | IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29); transcription factor

Coordinates

chrA03:+:28590024..28591175

Molecular Weight (calculated)

27863.7 Da

IEP (calculated)

5.358

GRAVY (calculated)

-0.572

Length

243 amino acids

Sequence
(BLAST)

001: MELDLDLSLS PHTNSSKFGF CFDLNKHCAT EGVVSCLNTK QTRFDSMFWL ENMEEDCYVP KPCSFSLNGQ PDEEDEGPLE SDSTIVDDEE EDGEVVGWPP
101: IKSCMTKYHN YRRSRNHPYH HHGRRINIPN PTATIIGLRP SSSSTSSPRS SMYVKVKMDG VAIARKVDIK LFNSYESLTK SLITMFTQYQ DCDREDTSYK
201: FTFQGKEGDW LLPGDVPWKI FAESVHRISI IRDCPCAYTR LLF

Best Arabidopsis Sequence Match ( AT4G32280.1 )
(BLAST)

001: MELDLGLSLS PHKSSKLGFN FDLNKHCAIE GAASCLGTEK LRFEATFGLG NVEENCYMPK QRLFALNGQP NEEDEDPLES ESSIVYDDEE ENSEVVGWPP
101: VKTCMIKYGS YHHRHIRNHH HCPYHHRGRR ITAMNNNISN PTTATVGSSS SSSISSRSSM YVKVKMDGVA IARKVDIKLF NSYESLTNSL ITMFTEYEDC
201: DREDTNYTFT FQGKEGDWLL RGDVTWKIFA ESVHRISIIR DRPCAYTRCL F

Arabidopsis Description

IAA29Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.