Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000604.1-P
Bra001670.1-P
Bra002327.1-P
Bra002479.1-P
Bra002729.1-P
Bra003518.1-P
Bra007632.1-P
Bra007720.1-P
Bra009867.1-P
Bra011082.1-P
Bra014303.1-P
Bra014378.1-P
Bra014419.1-P
Bra015289.1-P
Bra015298.1-P
Bra016517.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra018993.1-P
Bra020125.1-P
Bra021257.1-P
Bra022224.1-P
Bra025720.1-P
Bra026755.1-P
Bra027944.1-P
Bra028110.1-P
Bra030560.1-P
Bra032520.1-P
Bra033091.1-P
Bra033136.1-P
Bra034234.1-P
Bra035427.1-P
Bra036557.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G25890.1 Bra015289.1-P AT1G04100.1 21798944
AT5G25890.1 Bra015298.1-P AT1G04250.1 21734647
AT5G25890.1 Bra030560.1-P AT1G04250.1 21734647
AT5G25890.1 Bra032520.1-P AT1G04250.1 21734647
AT5G25890.1 Bra026755.1-P AT1G15580.1 21734647
AT5G25890.1 Bra016517.1-P AT1G19220.1 21734647
AT5G25890.1 Bra025720.1-P AT1G19220.1 21734647
AT5G25890.1 Bra017362.1-P AT1G34310.1 22096563
AT5G25890.1 Bra018124.1-P AT1G34310.1 22096563
AT5G25890.1 Bra027944.1-P AT1G34310.1 22096563
AT5G25890.1 Bra034234.1-P AT1G34310.1 22096563
AT5G25890.1 Bra014303.1-P AT1G51950.1 21734647
AT5G25890.1 Bra018938.1-P AT1G51950.1 21734647
AT5G25890.1 Bra018993.1-P AT1G52830.1 21798944
AT5G25890.1 Bra035427.1-P AT1G59750.1 22096563
AT5G25890.1 Bra040476.1-P AT2G46990.1 21734647
AT5G25890.1 Bra040122.1-P AT3G04730.1 21734647
AT5G25890.1 Bra040398.1-P AT3G04730.1 21734647
AT5G25890.1 Bra040122.1-P AT3G04730.1 21798944
AT5G25890.1 Bra040398.1-P AT3G04730.1 21798944
AT5G25890.1 Bra033091.1-P AT3G15440.1 21245844
AT5G25890.1 Bra033136.1-P AT3G15440.1 21245844
AT5G25890.1 Bra001670.1-P AT3G17600.1 21734647
AT5G25890.1 Bra021257.1-P AT3G17600.1 21734647
AT5G25890.1 Bra022224.1-P AT3G17600.1 21734647
AT5G25890.1 Bra007632.1-P AT3G61830.1 22096563
AT5G25890.1 Bra014419.1-P AT3G61830.1 22096563
AT5G25890.1 Bra003518.1-P AT3G62980.1 21734647
AT5G25890.1 Bra007720.1-P AT3G62980.1 21734647
AT5G25890.1 Bra014378.1-P AT3G62980.1 21734647
AT5G25890.1 Bra039732.1-P AT4G14560.1 21734647
AT5G25890.1 Bra011082.1-P AT4G29080.1 21734647
AT5G25890.1 Bra002327.1-P AT5G20730.1 21734647
AT5G25890.1 Bra020125.1-P AT5G20730.1 21734647
AT5G25890.1 Bra009867.1-P AT5G25890.1 21245844
AT5G25890.1 Bra036557.1-P AT5G25890.1 21245844
AT5G25890.1 Bra028110.1-P AT5G37020.1 21734647
AT5G25890.1 Bra000604.1-P AT5G49980.1 21734647
AT5G25890.1 Bra002729.1-P AT5G57420.1 21734647
AT5G25890.1 Bra002479.1-P AT5G60450.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88204 Canola cytosol, nucleus, peroxisome 98.3 99.43
CDX80545 Canola cytosol, nucleus, plastid 94.89 95.98
AT5G25890.1 Thale cress nucleus 88.64 89.14
Bra036557.1-P Field mustard nucleus 82.39 82.86
Bra018938.1-P Field mustard nucleus 50.57 35.18
Bra021257.1-P Field mustard cytosol 14.2 34.72
Os01t0190300-01 Rice nucleus 46.02 34.03
Zm00001d039513_P001 Maize cytosol, nucleus, plastid 43.75 33.62
TraesCS1A01G122600.2 Wheat nucleus 42.61 33.33
GSMUA_Achr3P16300_001 Banana endoplasmic reticulum, golgi, mitochondrion, plastid 43.18 33.33
TraesCS1D01G123500.1 Wheat nucleus 42.61 33.04
Bra014303.1-P Field mustard nucleus 50.0 32.59
TraesCS3B01G127400.1 Wheat nucleus 41.48 31.74
Zm00001d010360_P001 Maize cytosol, nucleus 40.91 31.58
TraesCS3D01G110200.1 Wheat nucleus 40.91 31.3
Bra021184.1-P Field mustard nucleus 47.73 31.23
Bra001670.1-P Field mustard nucleus 26.14 31.08
HORVU1Hr1G028170.4 Barley cytosol, nucleus, plastid 42.05 29.96
GSMUA_Achr5P09310_001 Banana endoplasmic reticulum 39.77 29.79
Bra022164.1-P Field mustard nucleus 47.73 29.47
Bra001634.1-P Field mustard nucleus 45.45 29.41
HORVU3Hr1G019750.4 Barley cytosol, nucleus, plastid 40.91 29.39
EES17832 Sorghum nucleus 40.34 29.34
Os02t0228900-01 Rice nucleus 50.0 29.33
TraesCS3A01G108400.1 Wheat cytosol, nucleus, peroxisome 41.48 28.97
Zm00001d016277_P002 Maize nucleus 47.73 28.09
OQU84670 Sorghum nucleus 46.59 28.08
Bra022224.1-P Field mustard nucleus, plastid 25.0 27.85
Zm00001d037691_P003 Maize cytosol, nucleus 38.07 27.13
Bra040476.1-P Field mustard cytosol, plastid 26.7 27.01
Bra003484.1-P Field mustard nucleus, plastid 26.14 26.74
Bra015326.1-P Field mustard nucleus 34.09 25.53
Bra011045.1-P Field mustard nucleus 35.23 25.51
GSMUA_AchrUn_... Banana nucleus 44.32 25.32
TraesCS1B01G356600.1 Wheat cytosol 42.05 24.92
TraesCS1A01G343300.1 Wheat nucleus 40.91 24.49
Os01t0741900-01 Rice nucleus 46.59 24.48
TraesCS1D01G345400.1 Wheat nucleus 40.91 24.41
Bra007661.1-P Field mustard plastid 24.43 24.29
Bra005508.1-P Field mustard nucleus 34.66 24.02
GSMUA_Achr7P13680_001 Banana nucleus 50.0 23.98
Bra022934.1-P Field mustard nucleus 32.95 23.97
TraesCS3D01G276600.1 Wheat cytosol, mitochondrion, nucleus 45.45 23.88
TraesCS3A01G276500.1 Wheat cytosol, mitochondrion, nucleus 45.45 23.46
TraesCS3B01G310500.1 Wheat cytosol, mitochondrion, nucleus 45.45 23.32
Os05t0523300-01 Rice nucleus 43.18 23.24
Zm00001d038784_P001 Maize nucleus 44.89 22.38
KXG33336 Sorghum nucleus 46.02 22.19
Zm00001d043515_P002 Maize cytosol, mitochondrion, nucleus 44.89 22.13
HORVU3Hr1G070620.5 Barley cytosol, mitochondrion, nucleus 44.32 22.1
OQU86163 Sorghum golgi, plastid 44.89 22.07
KXG22376 Sorghum nucleus 43.18 22.03
Bra014411.1-P Field mustard nucleus, plastid 15.34 21.43
Bra015289.1-P Field mustard nucleus 28.98 18.82
Bra032503.1-P Field mustard nucleus 32.95 18.71
Bra011332.1-P Field mustard nucleus 22.16 16.88
Bra023958.1-P Field mustard nucleus 22.73 16.46
Bra024187.1-P Field mustard plastid 34.66 15.33
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra009867EnsemblPlants:Bra009867.1
EnsemblPlants:Bra009867.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4D069InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF2SUPFAM:SSF54277UniParc:UPI000253F35D::
Description
AT5G25890 (E=2e-083) IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28); transcription factor
Coordinates
chrA06:+:17782025..17783155
Molecular Weight (calculated)
20333.3 Da
IEP (calculated)
9.036
GRAVY (calculated)
-0.714
Length
176 amino acids
Sequence
(BLAST)
001: MEEEKRLELR LAPPCHQLTH NSNINGSKQR SLTKETSFVS NNRVDAAPVV LVGWPPVRSS RRYLTSQLKE EMKKIESDEE RELYVKINME GVPIGRKVNL
101: SAYNNYQQLS HAVDQLFKKD SSDLNRQYTL VYEDTEGDKV LVGDVPWEMF VSTVKRLHVL KTSHVSMLSP RKNCKE
Best Arabidopsis Sequence Match ( AT5G25890.1 )
(BLAST)
001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE
Arabidopsis Description
IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.