Factsheet for Bra014419.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra002479.1-P
Bra002729.1-P
Bra007632.1-P
Bra014303.1-P
Bra014419.1-P
Bra015298.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra018993.1-P
Bra021117.1-P
Bra024406.1-P
Bra027232.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra034234.1-P
Bra037824.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61830.1	Bra015298.1-P	AT1G04250.1	21734647
AT3G61830.1	Bra030560.1-P	AT1G04250.1	21734647
AT3G61830.1	Bra032520.1-P	AT1G04250.1	21734647
AT3G61830.1	Bra017362.1-P	AT1G34310.1	22096563
AT3G61830.1	Bra018124.1-P	AT1G34310.1	22096563
AT3G61830.1	Bra027944.1-P	AT1G34310.1	22096563
AT3G61830.1	Bra034234.1-P	AT1G34310.1	22096563
AT3G61830.1	Bra014303.1-P	AT1G51950.1	22096563
AT3G61830.1	Bra018938.1-P	AT1G51950.1	22096563
AT3G61830.1	Bra018993.1-P	AT1G52830.1	22096563
AT3G61830.1	Bra001598.1-P	AT3G15540.1	22096563
AT3G61830.1	Bra021117.1-P	AT3G15540.1	22096563
AT3G61830.1	Bra027232.1-P	AT3G15540.1	22096563
AT3G61830.1	Bra007632.1-P	AT3G61830.1	22096563
AT3G61830.1	Bra014419.1-P	AT3G61830.1	22096563
AT3G61830.1	Bra002729.1-P	AT5G57420.1	21734647
AT3G61830.1	Bra002479.1-P	AT5G60450.1	22096563
AT3G61830.1	Bra024406.1-P	AT5G65670.1	22096563
AT3G61830.1	Bra037824.1-P	AT5G65670.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G61830.1	Thale cress	nucleus	85.95	79.24
Bra004530.1-P	Field mustard	nucleus	71.71	68.15
Bra013748.1-P	Field mustard	nucleus	57.66	53.16
KRH68924	Soybean	nucleus	61.08	51.21
VIT_15s0046g00290.t01	Wine grape	nucleus	64.68	51.14
Bra019255.1-P	Field mustard	nucleus	57.12	50.88
GSMUA_Achr2P19760_001	Banana	nucleus	60.36	50.15
GSMUA_Achr10P...	Banana	nucleus	60.18	50.08
PGSC0003DMT400000345	Potato	nucleus	61.8	50.07
Solyc01g096070.2.1	Tomato	nucleus	61.8	49.78
GSMUA_AchrUn_...	Banana	nucleus	56.04	48.98
GSMUA_Achr7P24330_001	Banana	nucleus	57.66	48.05
KRH06451	Soybean	nucleus	61.98	48.04
KRH47893	Soybean	nucleus	61.26	47.49
Bra007632.1-P	Field mustard	nucleus	87.21	45.88
Bra035427.1-P	Field mustard	nucleus	54.41	45.41
Bra034234.1-P	Field mustard	nucleus	40.9	41.96
Os01t0236300-01	Rice	nucleus	52.25	41.49
Bra027944.1-P	Field mustard	nucleus	40.36	40.8
EES02172	Sorghum	nucleus	49.91	40.26
Bra025775.1-P	Field mustard	nucleus	33.87	40.0
Zm00001d039267_P005	Maize	nucleus	47.39	38.01
Bra018124.1-P	Field mustard	nucleus	37.66	37.66
TraesCS3D01G166700.1	Wheat	nucleus	51.17	37.47
TraesCS3B01G190100.1	Wheat	nucleus	51.17	37.47
TraesCS3A01G159200.1	Wheat	nucleus	51.17	37.42
Bra017362.1-P	Field mustard	nucleus	36.22	37.22
HORVU3Hr1G032230.6	Barley	nucleus, plastid	50.81	35.25
Bra010048.1-P	Field mustard	nucleus	53.69	35.02
Bra035910.1-P	Field mustard	nucleus	52.07	32.55
Bra002479.1-P	Field mustard	nucleus	40.36	29.55
Bra004125.1-P	Field mustard	nucleus	41.08	29.23
Bra010776.1-P	Field mustard	nucleus	39.46	26.32
Bra028110.1-P	Field mustard	nucleus	40.0	26.3
Bra016492.1-P	Field mustard	nucleus	38.56	25.6
Bra012190.1-P	Field mustard	nucleus	39.28	25.14
Bra025720.1-P	Field mustard	nucleus	40.54	21.45
Bra016517.1-P	Field mustard	nucleus	38.56	21.19
Bra020125.1-P	Field mustard	nucleus	39.82	20.09
Bra002327.1-P	Field mustard	nucleus	39.46	15.22

Protein Annotations

MapMan:15.5.5.1	Gene3D:2.30.30.1040	Gene3D:2.40.330.10	Gene3D:3.10.20.90	ProteinID:AFD01316	ProteinID:AFD01316.1
InterPro:AUX/IAA_dom	InterPro:Auxin_resp	InterPro:B3_DNA-bd	EnsemblPlantsGene:Bra014419	EnsemblPlants:Bra014419.1	EnsemblPlants:Bra014419.1-P
ncoils:Coil	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009725	GO:GO:0009734	GO:GO:0009987	UniProt:H9B4E3
InterPro:IPR000270	InterPro:IPR003340	InterPro:IPR015300	EMBL:JN979482	InterPro:PB1_dom	PFAM:PF02309
PFAM:PF02362	PFAM:PF06507	PFscan:PS50863	PFscan:PS51745	PANTHER:PTHR31384	PANTHER:PTHR31384:SF17
SMART:SM01019	SUPFAM:SSF101936	SUPFAM:SSF54277	UniParc:UPI0002535823	SEG:seg	:

Description

AT3G61830 (E=4e-207) ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18); transcription factor

Coordinates

chrA04:-:514777..517525

Molecular Weight (calculated)

62441.6 Da

IEP (calculated)

6.389

GRAVY (calculated)

-0.402

Length

555 amino acids

Sequence
(BLAST)

001: MANVDGDDLR TSLSRSYNDE LYTELWKACA GPLVEVPLAG EKVFYFPQGH MEQLVASTNQ GIESEEIPDF KLPPKILCRV LSVMLKAEHD TDEVYAQITL
101: KPEEDQSELT SLDPPLVEPT KQMFHSFVKI LTASDTSTHG GFSVLRKHAT ECLPALDMGQ ATPTQELVTR DLHGFEWRFK HIFRGQPRRH LLTTGWSTFV
201: SSKRLVAGDA FVFLRGENGD LRVGVRRLAR HQSTMPTSVI SSQSMHLGVL ATASHAVVTK TIFLVFYKPR ISQFIVGVNK YMEAMKHGFS LGTRFRMRFE
301: GEESPERMFT GTIVGIGDLS SQWPASTWRS LQVQWDEPTT FQRPDRVSPW EIEPFLSSPP VSTPAQQSQP KCKRSRPVES SVLTPAPPSF LYGFPQSQET
401: PSPPPPSASS CYRLFGFDLT SNPPAPIPPD KCQEPITPSA ANEPKKQQKQ RTRTKVIMQG VAVGRAVDLT LLKSYNELIK ELEEMFEIKG QLLTREKWVV
501: VFTDDEGDMM LAGDDPWNEF CKMAKKIFIY SSDEVKKMTT MLKSSSSLEN DESMD

Best Arabidopsis Sequence Match ( AT3G61830.1 )
(BLAST)

001: MASVEGDDDF GSSSSRSYQD QLYTELWKVC AGPLVEVPRA QERVFYFPQG HMEQLVASTN QGINSEEIPV FDLPPKILCR VLDVTLKAEH ETDEVYAQIT
101: LQPEEDQSEP TSLDPPIVGP TKQEFHSFVK ILTASDTSTH GGFSVLRKHA TECLPSLDMT QATPTQELVT RDLHGFEWRF KHIFRGQPRR HLLTTGWSTF
201: VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF
301: EGEESPERIF TGTIVGSGDL SSQWPASKWR SLQVQWDEPT TVQRPDKVSP WEIEPFLATS PISTPAQQPQ SKCKRSRPIE PSVKTPAPPS FLYSLPQSQD
401: SINASLKLFQ DPSLERISGG YSSNNSFKPE TPPPPTNCSY RLFGFDLTSN SPAPIPQDKQ PMDTCGAAKC QEPITPTSMS EQKKQQTSRS RTKVQMQGIA
501: VGRAVDLTLL KSYDELIDEL EEMFEIQGQL LARDKWIVVF TDDEGDMMLA GDDPWNEFCK MAKKIFIYSS DEVKKMTTKL KISSSLENEE YGNESFENRS
601: RG

Arabidopsis Description

ARF18Auxin response factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5W9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.