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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001670.1-P
Bra001900.1-P
Bra002327.1-P
Bra009867.1-P
Bra010048.1-P
Bra012190.1-P
Bra013748.1-P
Bra015298.1-P
Bra016492.1-P
Bra017362.1-P
Bra018124.1-P
Bra019255.1-P
Bra020125.1-P
Bra021257.1-P
Bra022224.1-P
Bra025775.1-P
Bra026755.1-P
Bra027944.1-P
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra034234.1-P
Bra035427.1-P
Bra035910.1-P
Bra036557.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G34310.1 Bra012190.1-P AT1G19850.1 22096563
AT1G34310.1 Bra016492.1-P AT1G19850.1 22096563
AT1G34310.1 Bra025775.1-P AT1G19850.1 22096563
AT1G34310.1 Bra017362.1-P AT1G34310.1 22096563
AT1G34310.1 Bra018124.1-P AT1G34310.1 22096563
AT1G34310.1 Bra027944.1-P AT1G34310.1 22096563
AT1G34310.1 Bra034234.1-P AT1G34310.1 22096563
AT1G34310.1 Bra035427.1-P AT1G59750.1 22096563
AT1G34310.1 Bra001670.1-P AT3G17600.1 21734647
AT1G34310.1 Bra021257.1-P AT3G17600.1 21734647
AT1G34310.1 Bra022224.1-P AT3G17600.1 21734647
AT1G34310.1 Bra013748.1-P AT4G23980.1 22096563
AT1G34310.1 Bra019255.1-P AT4G23980.1 22096563
AT1G34310.1 Bra010048.1-P AT5G62000.1 21734647
AT1G34310.1 Bra035910.1-P AT5G62000.1 21734647
AT1G34390.1 Bra017362.1-P AT1G34310.1 21734647
AT1G34390.1 Bra018124.1-P AT1G34310.1 21734647
AT1G34390.1 Bra027944.1-P AT1G34310.1 21734647
AT1G34390.1 Bra034234.1-P AT1G34310.1 21734647
AT1G34390.1 Bra040476.1-P AT2G46990.1 21734647
AT1G34390.1 Bra040122.1-P AT3G04730.1 21734647
AT1G34390.1 Bra040398.1-P AT3G04730.1 21734647
AT1G34390.1 Bra001900.1-P AT3G23050.1 21734647
AT1G34390.1 Bra033886.1-P AT3G23050.1 21734647
AT1G34390.1 Bra009867.1-P AT5G25890.1 21734647
AT1G34390.1 Bra036557.1-P AT5G25890.1 21734647
AT1G35240.1 Bra015298.1-P AT1G04250.1 21734647
AT1G35240.1 Bra030560.1-P AT1G04250.1 21734647
AT1G35240.1 Bra032520.1-P AT1G04250.1 21734647
AT1G35240.1 Bra026755.1-P AT1G15580.1 21734647
AT1G35240.1 Bra002327.1-P AT5G20730.1 21734647
AT1G35240.1 Bra020125.1-P AT5G20730.1 21734647
AT1G35540.1 Bra026755.1-P AT1G15580.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48583 Canola nucleus 100.0 98.9
Bra027944.1-P Field mustard nucleus 61.74 60.84
Bra018124.1-P Field mustard nucleus 60.63 59.1
Bra017362.1-P Field mustard nucleus 54.16 54.26
AT1G34390.1 Thale cress nucleus 53.23 48.16
AT1G35520.1 Thale cress nucleus 52.68 48.06
AT1G35240.1 Thale cress nucleus 52.5 47.97
AT1G34410.1 Thale cress nucleus 53.42 47.69
AT1G35540.1 Thale cress nucleus 52.87 47.27
AT1G34310.1 Thale cress nucleus 51.2 46.71
AT1G34170.3 Thale cress nucleus 46.03 45.6
Bra014419.1-P Field mustard nucleus 41.96 40.9
Bra013748.1-P Field mustard nucleus 45.47 40.86
Bra019255.1-P Field mustard nucleus 45.29 39.33
Bra004530.1-P Field mustard nucleus 42.14 39.04
VIT_02s0025g01740.t01 Wine grape nucleus 46.4 36.8
KRH49135 Soybean nucleus 43.99 35.84
KRH00001 Soybean nucleus 43.07 35.09
PGSC0003DMT400031965 Potato nucleus 42.33 34.96
KRH75716 Soybean nucleus 44.18 34.54
GSMUA_Achr10P... Banana nucleus 42.33 34.33
KRH65922 Soybean nucleus 43.81 34.3
Solyc08g082630.2.1 Tomato nucleus 40.67 34.16
GSMUA_AchrUn_... Banana nucleus 39.93 34.02
GSMUA_Achr2P19760_001 Banana nucleus 41.96 33.98
Solyc08g008380.2.1 Tomato nucleus 42.88 33.97
Bra025775.1-P Field mustard nucleus 28.84 33.19
Bra035427.1-P Field mustard nucleus 39.93 32.48
GSMUA_Achr7P24330_001 Banana nucleus 39.93 32.43
Os01t0236300-01 Rice nucleus 39.0 30.19
EES02172 Sorghum nucleus 37.52 29.51
Zm00001d039267_P005 Maize nucleus 35.86 28.03
TraesCS3D01G166700.1 Wheat nucleus 38.26 27.31
TraesCS3B01G190100.1 Wheat nucleus 38.26 27.31
TraesCS3A01G159200.1 Wheat nucleus 38.26 27.27
HORVU3Hr1G032230.6 Barley nucleus, plastid 38.08 25.75
Bra010048.1-P Field mustard nucleus 40.3 25.62
Bra035910.1-P Field mustard nucleus 39.74 24.21
Bra004125.1-P Field mustard nucleus 34.01 23.59
Bra002479.1-P Field mustard nucleus 32.53 23.22
Bra028110.1-P Field mustard nucleus 34.38 22.04
Bra010776.1-P Field mustard nucleus 33.64 21.88
Bra007632.1-P Field mustard nucleus 41.77 21.42
Bra016492.1-P Field mustard nucleus 33.09 21.41
Bra012190.1-P Field mustard nucleus 33.46 20.88
Bra016517.1-P Field mustard nucleus 35.3 18.91
Bra025720.1-P Field mustard nucleus 36.41 18.78
Bra020125.1-P Field mustard nucleus 33.64 16.55
Bra002327.1-P Field mustard nucleus 33.27 12.51
Protein Annotations
MapMan:15.5.5.1Gene3D:2.30.30.1040Gene3D:2.40.330.10Gene3D:3.10.20.90ProteinID:AFD01322ProteinID:AFD01322.1
InterPro:AUX/IAA_domInterPro:Auxin_respInterPro:B3_DNA-bdEnsemblPlantsGene:Bra034234EnsemblPlants:Bra034234.1EnsemblPlants:Bra034234.1-P
InterPro:DNA-bd_pseudobarrel_sfGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009719GO:GO:0009725GO:GO:0009734GO:GO:0009987UniProt:H9B4E9InterPro:IPR000270
InterPro:IPR003340InterPro:IPR015300EMBL:JN979488InterPro:PB1_domPFAM:PF02309PFAM:PF02362
PFAM:PF06507PFscan:PS50863PFscan:PS51745PANTHER:PTHR31384PANTHER:PTHR31384:SF1SMART:SM01019
SUPFAM:SSF101936SUPFAM:SSF54277UniParc:UPI0002535829:::
Description
AT1G34410 (E=3e-125) ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21); transcription factor
Coordinates
chrA01:+:26814963..26817995
Molecular Weight (calculated)
61877.6 Da
IEP (calculated)
6.616
GRAVY (calculated)
-0.439
Length
541 amino acids
Sequence
(BLAST)
001: MANNQTMNAQ PKFRGTEGVN RYLYDQLWKL CAGPLFDLPK IGEEVYYFPQ GNIEQLVASA NDNLCQLKPI FDISSRIHCN VISIKLKVET NTDEVYAKVS
101: LLPCSPEVEI TFPNDNNEQN IKYFTKVLTA SDIGPHGDFI LFKKDAIECL PPLDMSQLIP SQEIVAKDLH DHVWKFKHTF RGTPKRHLFT SGWKEFVKGK
201: SLAVGDSFVF LRGENGESRV GIRKTSHQQS DMSSSVISKE SMHHGFIASA SNAIHTKCMF DVFYKPKSSK FIVNCDKFLD AVNMKFNTSS RFTMKFEGHD
301: FNEIIYSGTI VKMEDFSIYW KGSEWRNLQV QWDEAATIPR PNKVSLWEIE PLIPSSNILK SVIQNNKRQR EINEFGPIIS KPDYNDQMVQ STKENSTTNA
401: SSSFRLFGVD LTASSKARDV LEPLESYQKN KTSEIFEEEN LDQTQAVTSL TEIQRKELSF TTSSTKVHME GVTRTVDLTV FDGYNHMIVE LEKLFNIEGK
501: LHMHSQWKLT FKDHEGDMML VGDDPWPKFC NIVKEIVISS K
Best Arabidopsis Sequence Match ( AT1G34410.1 )
(BLAST)
001: MESGNIVNAQ PKLSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVQAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDEIYAEI
101: TLMPDTTQVV IPTQSENRFR PLVNSFTKVL TASDTSAYGG FSVPKKHAIE CLPPLDMSQP LPAQEILAID LHDNQWRFRH NYRGTPQRHS LTTGWNEFIT
201: SKKLVKGDVI VFVRGETGEL RVGIRRARHQ QGNIPSSIVS IDCMRHGVIA SAKHAFDNQC IFIVVYKPRS SQFIVSYDKF LDAVNNKFNV GSRFTMRFEG
301: DDFSERRYFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF SRPNKVSPWE IEHLVPALNV PRSSLLKNKR LREVNEFGSS SSHLLPPILT QGQEIGQLSV
401: ASPMNISLRY RDTTEAAMNP SRLLMSYPVQ PMPKLNYNNQ MVTQIEENIT TKAGTNFRLF GVTLDTPPMI KDPIKQIGSD ISKLTERKKF GQSQTLRSPI
501: EIQSKQFSSS RTCTKVQMQG VTIGRAVDLS VLNGYDQLIL ELEKLFDIKG QLQTRNQWKI AFTDSDGYEM LVGDDPWPEF CKMVKKILIY SKEEVKNLKS
601: SKSLSS
Arabidopsis Description
ARF21Putative auxin response factor 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8N9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.