Factsheet for Bra036557.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000604.1-P
Bra001670.1-P
Bra002327.1-P
Bra002479.1-P
Bra002729.1-P
Bra003518.1-P
Bra007632.1-P
Bra007720.1-P
Bra009867.1-P
Bra011082.1-P
Bra014303.1-P
Bra014378.1-P
Bra014419.1-P
Bra015289.1-P
Bra015298.1-P
Bra016517.1-P
Bra017362.1-P
Bra018124.1-P
Bra018938.1-P
Bra018993.1-P
Bra020125.1-P
Bra021257.1-P
Bra022224.1-P
Bra025720.1-P
Bra026755.1-P
Bra027944.1-P
Bra028110.1-P
Bra030560.1-P
Bra032520.1-P
Bra033091.1-P
Bra033136.1-P
Bra034234.1-P
Bra035427.1-P
Bra036557.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G25890.1	Bra015289.1-P	AT1G04100.1	21798944
AT5G25890.1	Bra015298.1-P	AT1G04250.1	21734647
AT5G25890.1	Bra030560.1-P	AT1G04250.1	21734647
AT5G25890.1	Bra032520.1-P	AT1G04250.1	21734647
AT5G25890.1	Bra026755.1-P	AT1G15580.1	21734647
AT5G25890.1	Bra016517.1-P	AT1G19220.1	21734647
AT5G25890.1	Bra025720.1-P	AT1G19220.1	21734647
AT5G25890.1	Bra017362.1-P	AT1G34310.1	22096563
AT5G25890.1	Bra018124.1-P	AT1G34310.1	22096563
AT5G25890.1	Bra027944.1-P	AT1G34310.1	22096563
AT5G25890.1	Bra034234.1-P	AT1G34310.1	22096563
AT5G25890.1	Bra014303.1-P	AT1G51950.1	21734647
AT5G25890.1	Bra018938.1-P	AT1G51950.1	21734647
AT5G25890.1	Bra018993.1-P	AT1G52830.1	21798944
AT5G25890.1	Bra035427.1-P	AT1G59750.1	22096563
AT5G25890.1	Bra040476.1-P	AT2G46990.1	21734647
AT5G25890.1	Bra040122.1-P	AT3G04730.1	21734647
AT5G25890.1	Bra040398.1-P	AT3G04730.1	21734647
AT5G25890.1	Bra040122.1-P	AT3G04730.1	21798944
AT5G25890.1	Bra040398.1-P	AT3G04730.1	21798944
AT5G25890.1	Bra033091.1-P	AT3G15440.1	21245844
AT5G25890.1	Bra033136.1-P	AT3G15440.1	21245844
AT5G25890.1	Bra001670.1-P	AT3G17600.1	21734647
AT5G25890.1	Bra021257.1-P	AT3G17600.1	21734647
AT5G25890.1	Bra022224.1-P	AT3G17600.1	21734647
AT5G25890.1	Bra007632.1-P	AT3G61830.1	22096563
AT5G25890.1	Bra014419.1-P	AT3G61830.1	22096563
AT5G25890.1	Bra003518.1-P	AT3G62980.1	21734647
AT5G25890.1	Bra007720.1-P	AT3G62980.1	21734647
AT5G25890.1	Bra014378.1-P	AT3G62980.1	21734647
AT5G25890.1	Bra039732.1-P	AT4G14560.1	21734647
AT5G25890.1	Bra011082.1-P	AT4G29080.1	21734647
AT5G25890.1	Bra002327.1-P	AT5G20730.1	21734647
AT5G25890.1	Bra020125.1-P	AT5G20730.1	21734647
AT5G25890.1	Bra009867.1-P	AT5G25890.1	21245844
AT5G25890.1	Bra036557.1-P	AT5G25890.1	21245844
AT5G25890.1	Bra028110.1-P	AT5G37020.1	21734647
AT5G25890.1	Bra000604.1-P	AT5G49980.1	21734647
AT5G25890.1	Bra002729.1-P	AT5G57420.1	21734647
AT5G25890.1	Bra002479.1-P	AT5G60450.1	22096563

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19790	Canola	cytosol	97.71	87.69
AT5G25890.1	Thale cress	nucleus	82.86	82.86
Bra009867.1-P	Field mustard	cytosol	82.86	82.39
Bra018938.1-P	Field mustard	nucleus	48.57	33.6
Bra021257.1-P	Field mustard	cytosol	13.71	33.33
GSMUA_Achr3P16300_001	Banana	endoplasmic reticulum, golgi, mitochondrion, plastid	42.86	32.89
TraesCS1A01G122600.2	Wheat	nucleus	41.71	32.44
Os01t0190300-01	Rice	nucleus	44.0	32.35
Zm00001d039513_P001	Maize	cytosol, nucleus, plastid	42.29	32.31
TraesCS1D01G123500.1	Wheat	nucleus	41.71	32.16
Zm00001d010360_P001	Maize	cytosol, nucleus	41.14	31.58
Bra014303.1-P	Field mustard	nucleus	48.57	31.48
TraesCS3B01G127400.1	Wheat	nucleus	41.14	31.3
TraesCS3D01G110200.1	Wheat	nucleus	40.57	30.87
Bra001670.1-P	Field mustard	nucleus	25.71	30.41
Bra021184.1-P	Field mustard	nucleus	46.29	30.11
HORVU3Hr1G019750.4	Barley	cytosol, nucleus, plastid	41.14	29.39
GSMUA_Achr5P09310_001	Banana	endoplasmic reticulum	39.43	29.36
EES17832	Sorghum	nucleus	40.57	29.34
HORVU1Hr1G028170.4	Barley	cytosol, nucleus, plastid	41.14	29.15
Os02t0228900-01	Rice	nucleus	49.71	29.0
Bra022164.1-P	Field mustard	nucleus	46.86	28.77
Bra001634.1-P	Field mustard	nucleus	44.57	28.68
TraesCS3A01G108400.1	Wheat	cytosol, nucleus, peroxisome	41.14	28.57
Zm00001d016277_P002	Maize	nucleus	47.43	27.76
OQU84670	Sorghum	nucleus	46.29	27.74
Bra003484.1-P	Field mustard	nucleus, plastid	26.86	27.33
Bra022224.1-P	Field mustard	nucleus, plastid	24.57	27.22
Bra040476.1-P	Field mustard	cytosol, plastid	26.86	27.01
Zm00001d037691_P003	Maize	cytosol, nucleus	37.71	26.72
Bra011045.1-P	Field mustard	nucleus	36.57	26.34
Bra015326.1-P	Field mustard	nucleus	34.86	25.96
Bra007661.1-P	Field mustard	plastid	25.14	24.86
Bra022934.1-P	Field mustard	nucleus	34.29	24.79
GSMUA_AchrUn_...	Banana	nucleus	43.43	24.68
Os01t0741900-01	Rice	nucleus	46.86	24.48
Bra005508.1-P	Field mustard	nucleus	35.43	24.41
TraesCS1B01G356600.1	Wheat	cytosol	40.57	23.91
TraesCS3D01G276600.1	Wheat	cytosol, mitochondrion, nucleus	45.71	23.88
TraesCS1A01G343300.1	Wheat	nucleus	40.0	23.81
TraesCS3A01G276500.1	Wheat	cytosol, mitochondrion, nucleus	45.71	23.46
TraesCS1D01G345400.1	Wheat	nucleus	39.43	23.39
TraesCS3B01G310500.1	Wheat	cytosol, mitochondrion, nucleus	45.71	23.32
GSMUA_Achr7P13680_001	Banana	nucleus	48.57	23.16
HORVU3Hr1G070620.5	Barley	cytosol, mitochondrion, nucleus	45.71	22.66
Os05t0523300-01	Rice	nucleus	42.29	22.63
Bra014411.1-P	Field mustard	nucleus, plastid	16.0	22.22
KXG33336	Sorghum	nucleus	46.29	22.19
KXG22376	Sorghum	nucleus	43.43	22.03
Zm00001d043515_P002	Maize	cytosol, mitochondrion, nucleus	44.57	21.85
Zm00001d038784_P001	Maize	nucleus	44.0	21.81
OQU86163	Sorghum	golgi, plastid	43.43	21.23
Bra015289.1-P	Field mustard	nucleus	29.71	19.19
Bra032503.1-P	Field mustard	nucleus	33.71	19.03
Bra011332.1-P	Field mustard	nucleus	23.43	17.75
Bra023958.1-P	Field mustard	nucleus	24.57	17.7
Bra024187.1-P	Field mustard	plastid	36.0	15.83

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra036557	EnsemblPlants:Bra036557.1
EnsemblPlants:Bra036557.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4F648	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF2	SUPFAM:SSF54277	UniParc:UPI0002541CEF	:	:

Description

AT5G25890 (E=3e-079) IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28); transcription factor

Coordinates

chrA09:+:1765362..1766489

Molecular Weight (calculated)

19997.0 Da

IEP (calculated)

9.723

GRAVY (calculated)

-0.582

Length

175 amino acids

Sequence
(BLAST)

001: MEEEKRLELR LAPPCQQLTS NNNINGSTQR SLAKETSFVF NNRVETAPVV GWPPVRSSRR NLMVQPKEEM KKGVNDEVRE LYVKINMEGV LIGRKVNLSA
101: FNNYQQLSHA VDQLFTKNDL ANINRQYTLV YEDNEGDTVL VGDVPWEMFV STVKRLHVLK TSHASMLSPR KHGKA

Best Arabidopsis Sequence Match ( AT5G25890.1 )
(BLAST)

001: MEEEKRLELR LAPPCHQFTS NNNINGSKQK SSTKETSFLS NNRVEVAPVV GWPPVRSSRR NLTAQLKEEM KKKESDEEKE LYVKINMEGV PIGRKVNLSA
101: YNNYQQLSHA VDQLFSKKDS WDLNRQYTLV YEDTEGDKVL VGDVPWEMFV STVKRLHVLK TSHAFSLSPR KHGKE

Arabidopsis Description

IAA28Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:Q2VWA1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.