Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 73.97 | 78.51 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 76.03 | 74.49 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 59.92 | 64.44 |
| TraesCS1D01G123500.1 | Wheat | nucleus | 59.5 | 63.44 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 56.2 | 55.06 |
| CDX87072 | Canola | cytosol | 30.58 | 42.29 |
| AT5G25890.1 | Thale cress | nucleus | 29.75 | 41.14 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 29.34 | 40.8 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 29.34 | 40.8 |
| Bra036557.1-P | Field mustard | nucleus | 29.34 | 40.57 |
| Bra009867.1-P | Field mustard | cytosol | 29.34 | 40.34 |
| Bra018938.1-P | Field mustard | nucleus | 42.15 | 40.32 |
| CDY33844 | Canola | nucleus | 42.15 | 40.32 |
| CDY22876 | Canola | nucleus | 42.15 | 40.32 |
| CDX87863 | Canola | nucleus | 40.5 | 38.58 |
| PGSC0003DMT400006709 | Potato | nucleus | 44.21 | 37.81 |
| AT3G16500.1 | Thale cress | nucleus | 41.74 | 37.55 |
| CDY34957 | Canola | nucleus | 41.74 | 37.55 |
| Bra021184.1-P | Field mustard | nucleus | 41.74 | 37.55 |
| CDX82399 | Canola | nucleus | 42.15 | 37.5 |
| Bra001634.1-P | Field mustard | nucleus | 42.15 | 37.5 |
| CDY43104 | Canola | nucleus | 41.32 | 37.45 |
| CDY64626 | Canola | cytosol | 41.32 | 37.17 |
| Bra014303.1-P | Field mustard | nucleus | 41.32 | 37.04 |
| AT1G51950.1 | Thale cress | nucleus | 40.5 | 36.7 |
| CDY46538 | Canola | nucleus | 40.91 | 36.67 |
| CDY53439 | Canola | nucleus | 41.32 | 36.63 |
| OQU86163 | Sorghum | golgi, plastid | 54.13 | 36.59 |
| CDY19790 | Canola | cytosol | 29.34 | 36.41 |
| CDX75884 | Canola | cytosol | 40.5 | 36.16 |
| Solyc03g121060.2.1 | Tomato | nucleus | 42.56 | 35.89 |
| OQU84670 | Sorghum | nucleus | 41.74 | 34.59 |
| CDX92077 | Canola | nucleus | 40.5 | 34.39 |
| Bra022164.1-P | Field mustard | nucleus | 40.5 | 34.39 |
| KRH09948 | Soybean | nucleus | 43.39 | 32.81 |
| KRH44271 | Soybean | nucleus | 40.91 | 31.63 |
| KRH47203 | Soybean | nucleus | 41.32 | 31.55 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 43.39 | 30.43 |
| KRH23388 | Soybean | nucleus | 42.98 | 30.06 |
| EES13224 | Sorghum | nucleus | 26.86 | 26.97 |
| KXG19391 | Sorghum | nucleus | 22.73 | 26.96 |
| EES00605 | Sorghum | nucleus, plastid | 21.49 | 26.94 |
| KXG33336 | Sorghum | nucleus | 39.67 | 26.3 |
| KXG31308 | Sorghum | cytosol | 21.07 | 25.89 |
| KXG22376 | Sorghum | nucleus | 36.36 | 25.51 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 45.04 | 24.83 |
| KXG31359 | Sorghum | cytosol, nucleus, peroxisome | 29.34 | 23.99 |
| KXG28215 | Sorghum | nucleus | 26.86 | 18.16 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | EntrezGene:8055698 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | UniProt:C5YUA0 |
| EnsemblPlants:EES17832 | ProteinID:EES17832 | ProteinID:EES17832.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF33 | EnsemblPlantsGene:SORBI_3009G069700 | SUPFAM:SSF54277 | UniParc:UPI0001A88948 |
| RefSeq:XP_002439402.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:8116084..8118438
Molecular Weight (calculated)
24884.2 Da
IEP (calculated)
10.002
GRAVY (calculated)
-0.393
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNGGFGDD DEGSGLELSL GLPGYFSASP TQAAGGFEEK ANSGSASAAA RAKGGSNGFK ARQAAAAAPV VGWPPVRAFR RNLASTSLSS KPSREPPSCQ
101: QRGNNEPASN KPRMAAVEAG NKGLFVKVNM DGVPIGRKLD LGAHAGYDTL SAAVDHLFRG LLAAQASGSG GEQQPIAGIL NGGGGGGREY TLVYEDDEGD
201: QMLVGDVPWP MFIASARRLR VLRSSDLNPS SLRAASRKRA AA
101: QRGNNEPASN KPRMAAVEAG NKGLFVKVNM DGVPIGRKLD LGAHAGYDTL SAAVDHLFRG LLAAQASGSG GEQQPIAGIL NGGGGGGREY TLVYEDDEGD
201: QMLVGDVPWP MFIASARRLR VLRSSDLNPS SLRAASRKRA AA
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.