CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
EES12270
KXG19616
OQU75612
OQU75930
OQU76071
OQU78843
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	OQU78843	AT1G34430.1	21798944
AT5G55220.1	EES12270	AT4G04020.1	21798944
AT5G55220.1	EER89430	AT4G25200.1	21798944
AT5G55220.1	EER89431	AT4G25200.1	21798944
AT5G55220.1	KXG19616	AT4G25200.1	21798944
AT5G55220.1	OQU75612	AT4G25200.1	21798944
AT5G55220.1	OQU75930	AT4G25200.1	21798944
AT5G55220.1	OQU76071	AT4G25200.1	21798944
AT5G55220.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023292_P001	Maize	plastid	89.33	88.83
TraesCS7A01G222800.1	Wheat	plastid	78.1	77.95
TraesCS7D01G224400.1	Wheat	plastid	78.1	77.95
TraesCS7B01G129300.1	Wheat	plastid	77.9	77.76
HORVU7Hr1G045680.1	Barley	plastid	77.71	77.57
Os06t0308000-01	Rice	plastid	79.24	77.47
VIT_19s0090g01210.t01	Wine grape	plastid	55.81	54.66
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	58.86	54.21
Solyc07g064950.2.1	Tomato	nucleus, plastid	52.57	52.37
PGSC0003DMT400057431	Potato	plastid	53.9	51.83
Zm00001d000318_P001	Maize	peroxisome	27.62	51.06
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	11.05	50.0
KRH73811	Soybean	plastid	51.24	49.63
KRH14319	Soybean	plastid	51.43	49.54
AT5G55220.1	Thale cress	plastid	51.05	48.99
CDY20778	Canola	plastid	50.86	48.99
CDY06597	Canola	plastid	51.05	48.91
Bra035563.1-P	Field mustard	plastid	50.67	48.81
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	5.52	47.54
Zm00001d047056_P001	Maize	plastid	30.29	47.32
CDY19904	Canola	plastid	12.0	38.89
CDY19903	Canola	extracellular	9.52	35.71
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	16.57	33.21
Zm00001d013704_P001	Maize	plastid	13.71	32.0
CDY17312	Canola	endoplasmic reticulum	23.05	31.59

Protein Annotations

Gene3D:1.10.3120.10	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	EntrezGene:8071455	UniProt:C5YR25
ncoils:Coil	EnsemblPlants:EES16569	ProteinID:EES16569	ProteinID:EES16569.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0015031	InterPro:IPR036611
InterPro:IPR037041	HAMAP:MF_00303	PFAM:PF05697	PFAM:PF05698	PANTHER:PTHR30560	PANTHER:PTHR30560:SF3
EnsemblPlantsGene:SORBI_3008G021700	SUPFAM:SSF102735	SUPFAM:SSF109998	SUPFAM:SSF54534	unigene:Sbi.8872	TIGRFAMs:TIGR00115
InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf	InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf	InterPro:Trigger_fact/SurA_dom_sf
UniParc:UPI0001A88446	RefSeq:XP_002442731.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:1880058..1885510

Molecular Weight (calculated)

58762.8 Da

IEP (calculated)

4.919

GRAVY (calculated)

-0.327

Length

525 amino acids

Sequence
(BLAST)

001: MELSTVAAAV ASAAARPHGH FSSPRAASVS VSVSWNNSPS LASTSRRQRL LRRLPVTSAV VELRQAAAGG GDSLRVTETR QPGSSVKFSV EVPTSIIHDC
101: YQTTLQEYAK RFKVPGFRPG KIIPENILIN YVGPQHVQDA TIEAVLKHTL PQALSSVEER ALEDSVRILT QFDDMRNSFS LDNVFRYDVA VDVVPEVRWL
201: SEDKYKNLKV VVEIDEAVDA EKAAEKELQR RHKALGLLRV VADRGLQIGD LVVLDIFADS INSDGSKGEK ISSAESTGFH LDTEETNNLV PGFLGSLIGI
301: RPGEARSFPI QFPESFEQES LRGVHAQFTV VCKELFYREL PEMGDSLAVK LLPGCTTIDE VRGRILERCK EVEKMAIEQA TDNAILDQLG KLVEVDVPRA
401: LFQEQGQQLY GAKLLQLQAE RKLDKDQLAS LSTQRSVQAY LEDEKENITR IIKQMLAVGD VFKSENLQYS TEQLIKEVEN SIAEFKQYNQ DYDEDNIRQQ
501: VQDVLEAAKV LEWLKENCTV EYIRR

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.