Factsheet for Os06t0308000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0758000-01
Os06t0219500-00
Os09t0133600-01
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G55220.1	Os12t0182200-01	AT1G34430.1	21798944
AT5G55220.1	Os09t0133600-01	AT4G04020.1	21798944
AT5G55220.1	Os02t0758000-01	AT4G25200.1	21798944
AT5G55220.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G129300.1	Wheat	plastid	80.07	81.75
TraesCS7D01G224400.1	Wheat	plastid	79.7	81.37
HORVU7Hr1G045680.1	Barley	plastid	79.52	81.18
TraesCS7A01G222800.1	Wheat	plastid	79.52	81.18
Zm00001d023292_P001	Maize	plastid	79.14	80.49
EES16569	Sorghum	plastid	77.47	79.24
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	61.64	58.07
VIT_19s0090g01210.t01	Wine grape	plastid	57.73	57.84
Solyc07g064950.2.1	Tomato	nucleus, plastid	53.63	54.65
Bra002923.1-P	Field mustard	cytosol, nucleus, plastid	5.96	52.46
PGSC0003DMT400057431	Potato	plastid	53.26	52.38
KRH73811	Soybean	plastid	52.7	52.21
CDY06597	Canola	plastid	53.07	52.01
KRH14319	Soybean	plastid	52.7	51.93
AT5G55220.1	Thale cress	plastid	52.7	51.74
CDY20778	Canola	plastid	51.77	51.01
KRH26213	Soybean	cytosol, extracellular, nucleus, plastid	10.99	50.86
Bra035563.1-P	Field mustard	plastid	51.58	50.83
Zm00001d000318_P001	Maize	peroxisome	25.51	48.24
Zm00001d047056_P001	Maize	plastid	27.93	44.64
CDY19904	Canola	plastid	12.29	40.74
CDY19903	Canola	extracellular	10.06	38.57
KRH14348	Soybean	endoplasmic reticulum, extracellular, plasma membrane	17.13	35.11
CDY17312	Canola	endoplasmic reticulum	24.58	34.46
Zm00001d013704_P001	Maize	plastid	13.41	32.0

Protein Annotations

Gene3D:1.10.3120.10	MapMan:18.12.3	Gene3D:3.10.50.40	Gene3D:3.30.70.1050	EntrezGene:4340846	EMBL:AK099680
ProteinID:BAD62306.1	ProteinID:BAF19386.1	ProteinID:BAS97419.1	ProteinID:EAZ36764.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987	GO:GO:0015031	InterPro:IPR036611
InterPro:IPR037041	HAMAP:MF_00303	EnsemblPlantsGene:Os06g0308000	EnsemblPlants:Os06t0308000-01	PFAM:PF05697	PFAM:PF05698
PANTHER:PTHR30560	PANTHER:PTHR30560:SF3	UniProt:Q5Z4M6	SUPFAM:SSF102735	SUPFAM:SSF109998	SUPFAM:SSF54534
TIGRFAMs:TIGR00115	InterPro:Trig_fac	InterPro:Trigger_fac_C	InterPro:Trigger_fac_C_sf	InterPro:Trigger_fac_ribosome-bd_bac	InterPro:Trigger_fac_ribosome-bd_sf
InterPro:Trigger_fact/SurA_dom_sf	UniParc:UPI00004507F4	RefSeq:XP_015641143.1	SEG:seg	:	:

Description

trigger factor-like proteinSimilar to Trigger factor-like protein. (Os06t0308000-01)

Coordinates

chr6:+:11677059..11682089

Molecular Weight (calculated)

59934.1 Da

IEP (calculated)

4.942

GRAVY (calculated)

-0.365

Length

537 amino acids

Sequence
(BLAST)

001: MELATATAAA AASSTTRAHR PRSSRLAVPT RDSCSLLPSS SSRQFAALST SAASTASRSR AQRRRLPVAS AAVELREASS QGGDSVRVTE TLQPGSSVKF
101: SVEVPPSICQ QCYETTLQEY AKRFKIPGFR PGKVVPENVL INYVGPKHVQ DATVEAILRH TLPQALSSVE DRALEDSVRI LTKFEDMANS FSLDNVFRYD
201: VSVDVAPEVR WLSEDKYKNL KVVVEIDEIV DAEKAAEIEL KRRHKALGLL RIVADRGLQV GDLVVLDIFA ESITSDGSKG EKIPSAESKG FHLDTEENNN
301: LVPGFLGSLI GIRPGETRSF PLQFPESFEQ ESLQGVRAQF TVVCKELFYR ELPELDDSLA GKLLPGCTTM DQVRERILQR CKEVEKTAIE QATDNAILDQ
401: LGKLVEVDVP RALFQEQGQQ LYGAKLLQLQ AERKLDKDQL ASLSSQKSVQ EYLESERENI NRIIKQMLAV GEIFKAENLQ FSTEQLVKEV ENSIEEFKHY
501: NQDYDEGSIK QQVQDVLEAA KVLEWLKENC IIEYIRP

Best Arabidopsis Sequence Match ( AT5G55220.1 )
(BLAST)

001: MELCVISTTT TVKAINPFLP SITRRVSSRL FQSDSVLQFG GRLKKPISRP LDMSCVSRKI GFFGDFMSHG GNFRLFAAAS PAVETSVKED KLPADLKVTE
101: TVQANSSVKL SVEVPEIVCE DCYQRVLTEF MKLSKVPGFR PKTRVPENII VGFVGRQYVL RATVESILKR TLPHAMESVT GRALKDSIQI VSSFPDMEKA
201: YSKLKTLSYE VVVDVVPELK WNPEDGYKNM KVVVELGDEI DAKKACERQL RQKYKSLGAL KIVTERGLQV GDLAVVDISA TTIDEDGSTG QAIPDAESKG
301: FHFDTEEGNR LLPGFLDAII GIRAGESKSF TLVFPESWKQ ESLRGQRAQF TVDCKELFYR DLPTLDDSLA DKLLPGCTTL KEVEETLAKR CQEMEQEAKE
401: QATDNAILEQ IRKMVEVEIP QSLFEEQGRQ FYGARLLEIQ GNMKLNEDQL ASLSSQKAVN EFLETQRESI TNIIKQNIAV GDIFKRENLE FSTDELVKEV
501: ENSISEFKKH KQEFDEERVK DQVQEILEGA KVLEWLKDRA EIQYITR

Arabidopsis Description

TIGTrigger factor-like protein TIG, Chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9L5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.