Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- endoplasmic reticulum 2
- mitochondrion 4
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
23257241
plastid: 23257241 |
plastid:
27992503
|
gfp PMID:
23257241
doi
Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU85385 | Sorghum | mitochondrion | 77.27 | 76.92 |
| Zm00001d052194_P001 | Maize | mitochondrion | 74.09 | 74.77 |
| TraesCS6B01G346700.1 | Wheat | mitochondrion | 65.91 | 67.44 |
| TraesCS6A01G316200.1 | Wheat | mitochondrion | 64.55 | 66.05 |
| TraesCS6D01G295500.1 | Wheat | mitochondrion | 64.09 | 65.28 |
| GSMUA_Achr10P... | Banana | mitochondrion | 52.73 | 53.7 |
| VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 42.27 | 46.27 |
| KRH23958 | Soybean | mitochondrion | 43.64 | 45.28 |
| KRH39841 | Soybean | mitochondrion | 30.0 | 44.9 |
| Solyc08g078700.2.1 | Tomato | plastid | 42.27 | 44.29 |
| PGSC0003DMT400012249 | Potato | mitochondrion | 42.27 | 44.08 |
| AT5G51440.1 | Thale cress | mitochondrion | 41.82 | 43.81 |
| CDY00476 | Canola | mitochondrion | 31.82 | 43.48 |
| VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 39.55 | 43.28 |
| VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 40.91 | 43.27 |
| CDX99920 | Canola | mitochondrion | 31.36 | 43.12 |
| AT4G25200.1 | Thale cress | mitochondrion | 40.45 | 42.38 |
| Bra029174.1-P | Field mustard | mitochondrion | 37.73 | 42.13 |
| HORVU6Hr1G077710.3 | Barley | cytosol | 52.27 | 42.12 |
| CDY38862 | Canola | mitochondrion | 37.27 | 41.84 |
| Bra028253.1-P | Field mustard | mitochondrion | 30.45 | 41.61 |
| CDY32630 | Canola | mitochondrion | 31.36 | 40.59 |
| CDX89437 | Canola | mitochondrion | 39.09 | 40.38 |
| Bra013872.1-P | Field mustard | mitochondrion | 39.09 | 40.38 |
| CDY03368 | Canola | mitochondrion | 38.64 | 39.91 |
| Os06t0219500-00 | Rice | mitochondrion | 40.91 | 29.13 |
| Solyc08g078710.1.1 | Tomato | mitochondrion | 23.18 | 26.02 |
| PGSC0003DMT400012247 | Potato | mitochondrion | 21.82 | 24.62 |
| PGSC0003DMT400012246 | Potato | plastid | 14.55 | 18.82 |
| Solyc08g078720.2.1 | Tomato | mitochondrion | 14.09 | 18.45 |
Protein Annotations
| MapMan:19.1.8.8 | Gene3D:2.60.40.790 | EntrezGene:4330786 | InterPro:A-crystallin/Hsp20_dom | EMBL:AK064389 | EMBL:AK074003 |
| EMBL:AK105464 | ProteinID:BAD17092.1 | ProteinID:BAF10089.1 | ProteinID:BAS81008.1 | UniProt:E5D3K1 | ProteinID:EAZ24684.1 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006950 |
| GO:GO:0006970 | GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 | EMBL:GU120342 | InterPro:HSP20 |
| InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | EMBL:JF710844 | EnsemblPlantsGene:Os02g0758000 | EnsemblPlants:Os02t0758000-01 |
| PFAM:PF00011 | PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | UniProt:Q6Z7V2 | SUPFAM:SSF49764 |
| UniParc:UPI000035ADDF | RefSeq:XP_015626255.1 | SEG:seg | : | : | : |
Description
24.1 KDA CLASS I HEAT SHOCK PROTEINSimilar to Low molecular weight heat shock protein precursor (Mitochondrial small heat shock protein 22). (Os02t0758000-01)
Coordinates
chr2:+:31920854..31922068
Molecular Weight (calculated)
24098.6 Da
IEP (calculated)
7.771
GRAVY (calculated)
-0.520
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MASIVASKRI PLFRLVEQLL AASPAQGAAS ALRPVAVAGG SRAYNTGAQL RRHERDESDD DSGRGYDTRR PTRDATMPAF FSDVFRDPFS APQSLGRLLS
101: LMDDLATPAG RAGAATLRRG WNAKESEEAL HLRVDMPGLG KEHVKVWAEQ NSLVIKGEGE KEAGEDEGAA PARYSGRIEL APEVYRMDQI KAEMKNGVLK
201: VVVPKVKEEQ RRDVFQVNVE
101: LMDDLATPAG RAGAATLRRG WNAKESEEAL HLRVDMPGLG KEHVKVWAEQ NSLVIKGEGE KEAGEDEGAA PARYSGRIEL APEVYRMDQI KAEMKNGVLK
201: VVVPKVKEEQ RRDVFQVNVE
001: MASSSALALR RLLSSSTVAV PRALRAVRPV AASSRLFNTN AARNYEDGVD RNHHSNRHVS RHGGDFFSHI LDPFTPTRSL SQMLNFMDQV SEIPLVSATR
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
Arabidopsis Description
HSP23.523.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGM9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.