Factsheet for Os07t0599000-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G207000.1	Wheat	cytosol	67.58	80.81
TraesCS2D01G188400.1	Wheat	cytosol	67.42	80.61
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	65.97	77.55
EER97491	Sorghum	plastid	75.76	76.62
Zm00001d006769_P001	Maize	mitochondrion	75.12	75.73
Zm00001d022049_P001	Maize	mitochondrion	74.64	75.24
GSMUA_Achr1P13560_001	Banana	mitochondrion	64.53	65.58
Bra012457.1-P	Field mustard	cytosol	6.74	59.15
CDY40249	Canola	cytosol	6.74	59.15
VIT_13s0019g01590.t01	Wine grape	cytosol	9.31	58.0
VIT_01s0011g00580.t01	Wine grape	mitochondrion	56.5	57.14
PGSC0003DMT400072788	Potato	mitochondrion	54.57	55.11
KRH75029	Soybean	mitochondrion	54.09	54.71
KRH70880	Soybean	mitochondrion	53.93	54.63
Solyc05g012390.2.1	Tomato	nucleus	54.09	54.62
AT1G26460.1	Thale cress	mitochondrion	52.97	52.38
VIT_07s0005g04980.t01	Wine grape	cytosol	15.57	50.79
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	8.83	50.46
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	15.25	47.98
CDY72152	Canola	cytosol	4.01	47.17
GSMUA_Achr2P06170_001	Banana	plastid	40.45	46.24
VIT_11s0016g04430.t01	Wine grape	cytosol	7.7	43.24
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	12.68	42.7

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4343808	ProteinID:BAC81166.1	ProteinID:BAF22100.1	ProteinID:BAT02507.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os07g0599000	EnsemblPlants:Os07t0599000-01	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813	InterPro:Pentatricopeptide_repeat	UniProt:Q7XAM2
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00001B61DD	RefSeq:XP_015644599.1	SEG:seg	:

Description

Pentatricopeptide repeat domain containing protein. (Os07t0599000-01)

Coordinates

chr7:+:24451634..24455574

Molecular Weight (calculated)

68724.8 Da

IEP (calculated)

6.388

GRAVY (calculated)

-0.208

Length

623 amino acids

Sequence
(BLAST)

001: MAAAAATSRL LRRHPPPLPL LLRSSISSSR PLLQQPELSP AAAADAAPAT DAAPLPPKPS TGSPFYGENW RNPAAAANPS SSSLLPAVVG GGAHARAAAY
101: SASPGAAELK ETFAEWMAEQ RWEEMKQLFE FWVRSLDPAS GKPNRPDVDL FNHYLRAQLM SGALPIEMLD LAEQMREFEI TPNTASHNLI LKSMVQAQEA
201: DGAEKLIERM LQTGTQPDDE SYNLVVNLLI KLNRVDSTLK YLDLMLKSGY TISSSVFVEY VRACVRSGRL DTLASVIEKC KATDQNKVLC PPWSWCVEIA
301: EAAFEANNSK LGLFALEYLA RWIARSERVI PPLHLSVDEG LVLSALSAAA RTCSTDLLNA AWSILRKSLH QKRAPTPEAY LAKIYAHSSI GHLQRAFGTL
401: REFENTYGNF EDIDSELFSP FTSLRPLVVA CCKDGYTTLD SVYVQLENLS SADSPYKSVA ALNCVILGCA NIWDLERAYE TFEAIKEKFG LTPDIHSYNA
501: LLHAFGKRKK TEEACNVFQH LVSLGVKPNA TTYGLLVDTH LVNRDAKAAL AVIAEMVDAG FTPSKETLKK VRRRCSRESD FDSDEKVQSL AKQFNYRMGG
601: ENRREMLFNI EYSAEFTSTP SPS

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.