CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006769_P001	Maize	mitochondrion	90.91	90.61
Zm00001d022049_P001	Maize	mitochondrion	90.1	89.81
TraesCS2D01G188400.1	Wheat	cytosol	66.88	79.08
TraesCS2B01G207000.1	Wheat	cytosol	66.4	78.5
Os07t0599000-01	Rice	mitochondrion	76.62	75.76
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	64.29	74.72
GSMUA_Achr1P13560_001	Banana	mitochondrion	62.99	63.3
Bra012457.1-P	Field mustard	cytosol	6.66	57.75
CDY40249	Canola	cytosol	6.66	57.75
VIT_01s0011g00580.t01	Wine grape	mitochondrion	56.01	56.01
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	9.74	55.05
PGSC0003DMT400072788	Potato	mitochondrion	54.87	54.78
Solyc05g012390.2.1	Tomato	nucleus	54.55	54.46
KRH75029	Soybean	mitochondrion	54.38	54.38
KRH70880	Soybean	mitochondrion	53.9	53.98
VIT_07s0005g04980.t01	Wine grape	cytosol	16.56	53.4
VIT_13s0019g01590.t01	Wine grape	cytosol	8.44	52.0
AT1G26460.1	Thale cress	mitochondrion	52.92	51.75
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	16.4	51.01
GSMUA_Achr2P06170_001	Banana	plastid	40.58	45.87
CDY72152	Canola	cytosol	3.9	45.28
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	13.15	43.78
VIT_11s0016g04430.t01	Wine grape	cytosol	7.79	43.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8079003	UniProt:C5XD95	EnsemblPlants:EER97491	ProteinID:EER97491
ProteinID:EER97491.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3002G364900
unigene:Sbi.6141	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A83845	RefSeq:XP_002460970.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:+:72549894..72553891

Molecular Weight (calculated)

68295.4 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.213

Length

616 amino acids

Sequence
(BLAST)

001: MAAAAAAATS LLLRHNRNPH LLLLRAAISS SRALPQQPEL SPDPTAGAPD PAPLPPNPST GSPFYSQNWR NPAAANPPSS LLPTVLAGGA FGAEHRMAAF
101: YDTPNAAGLK ETFAKYMAEQ RWEDIKHLFD HWVRSLDATT GKPNHPDVDL FNHYLRANLM SGALPHEMLD LADHMREFEL EPNTASYNLV LKSMVAGQES
201: EGAEKLIERM LQTGTFPDDE SYNLVVGLLI RQNLVDSSLK YLDLILKSGY TLSLTVYTDY IRACMRSGRL DTLTSIIEKC KTTDKNKVLC PQWALCIDIA
301: EAAFEANNSK LALFALEFLA KWIARGENVK PPVQLSVNEG LVISALSAAG RTFSTDLLNA AWSLLRKSLR QKRAPTPETY LAKIYAHSSI GQLQRAFGTL
401: REFENAYGNS EDIDLELFSP FTSLHPLVVA CCKDGFTTLD SVYVQLENLS RADPPYKSVS ALNCVILGCA NIWDINRAYE TFVAIKEKFE LTPDIHSYNA
501: LLCAFGKLKQ TGEACNVFQH VLTLGVKPNS TTYSLLVDAH LANKDPKAAL AIIDEMVDAG FTPSKDTLRK VRRRCSRESD FDSDEKVQSL AKQFNYRLGG
601: ENRREMLYSI EYNPVY

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.