Factsheet for PGSC0003DMT400072788

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012390.2.1	Tomato	nucleus	97.73	97.73
VIT_01s0011g00580.t01	Wine grape	mitochondrion	64.34	64.45
GSMUA_Achr1P13560_001	Banana	mitochondrion	61.59	61.99
VIT_13s0019g01590.t01	Wine grape	cytosol	9.89	61.0
KRH75029	Soybean	mitochondrion	59.81	59.9
KRH70880	Soybean	mitochondrion	59.0	59.19
TraesCS2D01G188400.1	Wheat	cytosol	48.95	57.97
TraesCS2B01G207000.1	Wheat	cytosol	48.95	57.97
CDX85021	Canola	mitochondrion	57.37	57.75
AT1G26460.1	Thale cress	mitochondrion	58.67	57.46
Bra024715.1-P	Field mustard	mitochondrion	57.54	57.44
CDY16159	Canola	mitochondrion	57.54	57.44
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	48.62	56.6
VIT_07s0005g04980.t01	Wine grape	cytosol	17.5	56.54
Zm00001d006769_P001	Maize	mitochondrion	55.27	55.18
EER97491	Sorghum	plastid	54.78	54.87
Zm00001d022049_P001	Maize	mitochondrion	54.78	54.69
Os07t0599000-01	Rice	mitochondrion	55.11	54.57
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	16.86	52.53
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	9.08	51.38
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	15.4	51.35
GSMUA_Achr2P06170_001	Banana	plastid	36.14	40.92

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102599918	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885
InterPro:IPR011990	UniProt:M1CQY2	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400028320	PGSC:PGSC0003DMG400028320	EnsemblPlants:PGSC0003DMT400072788
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000296CA7F	RefSeq:XP_006348701.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028320]

Coordinates

chr5:-:458538..463571

Molecular Weight (calculated)

69465.3 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.239

Length

617 amino acids

Sequence
(BLAST)

001: MAILIRSRPL IRKFTNFKSI TTVPFLSQEP QLAGTPPENT TPLPPNPSSG SPLYNENWRS PFAATSQSVS SSVVPLGFLR QSPAARIQAM SESLDGEGLM
101: NLFADWVTTQ RWEDMKQVFE LWIRSLDRNG KPNKPDANLF NYYLRANLMM GATADDLLGL ASQMEEYGLV ANTASHNLIL KAMFQSGEPL SWADKAVKLL
201: ERMIATGVEY KEALPDEESY DLVTGLLFKA NLIDDALKYI DSALKSGYKL SMNVFNECVR SCIYSNRLDT LVSIIEKCKK TDQNKGLLPP WNMCTHLADS
301: ALQADNSELA FTSLEFFVKW IVRGETVKPP VLLSVDEGLL VAALGTAGRT YNVKLLNGAW EVLKRSLRQM RIPNPESFLA KIYAHASLGQ LQNAFATLHE
401: FEKAYGSSKE ESAEELFSPF TSLNPLAVAC CRNGFVTLDS VYYQLENLSR ADPPFKSLAA LNCVILGCAN IWDIDRAYQT FAAIESTFGL TPDIHSYNAL
501: IYAFGKLGKR DEATKVYEHF IDLGVKPNEM TYSLLVDAHL IKREPKAALS VVDEMVHAQY KPSKDMLKKI RRRCTREMDY ESDDRVEELT KKFNIRMGTE
601: NRRNMLFNLR YNMEYSG

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.