CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70880	Soybean	mitochondrion	94.64	94.8
VIT_13s0019g01590.t01	Wine grape	cytosol	11.36	70.0
VIT_01s0011g00580.t01	Wine grape	mitochondrion	67.69	67.69
CDX85021	Canola	mitochondrion	61.53	61.83
Bra024715.1-P	Field mustard	mitochondrion	61.85	61.65
AT1G26460.1	Thale cress	mitochondrion	62.99	61.59
CDY16159	Canola	mitochondrion	61.69	61.49
GSMUA_Achr1P13560_001	Banana	mitochondrion	61.04	61.34
VIT_07s0005g04980.t01	Wine grape	cytosol	18.99	61.26
TraesCS2D01G188400.1	Wheat	cytosol	50.65	59.88
TraesCS2B01G207000.1	Wheat	cytosol	50.65	59.88
PGSC0003DMT400072788	Potato	mitochondrion	59.9	59.81
Solyc05g012390.2.1	Tomato	nucleus	59.58	59.48
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	50.0	58.11
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	18.67	58.08
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	17.05	56.76
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	9.74	55.05
EER97491	Sorghum	plastid	54.38	54.38
Os07t0599000-01	Rice	mitochondrion	54.71	54.09
Zm00001d022049_P001	Maize	mitochondrion	53.73	53.56
Zm00001d006769_P001	Maize	mitochondrion	53.41	53.24
GSMUA_Achr2P06170_001	Banana	plastid	36.85	41.65

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100784647	MapMan:35.1	EMBL:ACUP02000107	EnsemblPlantsGene:GLYMA_01G058200	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7K223	EnsemblPlants:KRH75029	ProteinID:KRH75029	ProteinID:KRH75029.1
PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002336C78	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:7651327..7655874

Molecular Weight (calculated)

68508.9 Da

IEP (calculated)

6.600

GRAVY (calculated)

-0.186

Length

616 amino acids

Sequence
(BLAST)

001: MASQMAILFR TRTLLSSKPT TTTLIKTITT FPFLSQEPQL VDSTPPPSSS TTPLPPNPAS GSPLYNENWR SPIPPPPPAS SAATSHALAP VGFYNRATSE
101: TYDPRALLDL FGDWMASQQW HDVKFLFEAW VRSLDKTGKP NKPDVNLFNH YLRANLMLGA SAAELLDLVA QMAEFDVAPN TASFNLVLKA MCQAKETLAA
201: DKLLQRMLQS GNDALPDDES YDLVIGMLFS MDQIDTAFKY IDLILKSGNV LSMKVFMNCA GSCVNKGRLD TLVTIIERCR ASDQNKALCP NWDLCNFIVE
301: IATREDNSKL AFYGLEFMAK WIVKGERQRP PIYISVDEGL VLSALLTAGR TYNTDLLVAS WAVLDRSLRK KKAPNPESYL GKIYAHASLG NLQKAFGTLN
401: EYESAYGDSG QEAEDLFCPF TSLHPLVVAC SKKGFETLDN VYFQLENLNR AEPPYKSVAA LNCVILGCAN IWDLDRAYQT FESIGSTFGL IPDIHSYNGL
501: IYAFGKLKKT HEATRVFEHL VSLGLKSNAK SYSLLVDAHL INRDVKSALA VIDDMRAAGY EPSKEMLKKV RRRCTREMDN ESDARVQSLA NSLNYQLGSE
601: NRRDILFNLN YSMGYA

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.