Factsheet for Bra024715.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16159	Canola	mitochondrion	99.51	99.51
AT1G26460.1	Thale cress	mitochondrion	83.01	81.43
Bra012457.1-P	Field mustard	cytosol	8.9	77.46
VIT_13s0019g01590.t01	Wine grape	cytosol	11.49	71.0
VIT_01s0011g00580.t01	Wine grape	mitochondrion	65.05	65.26
KRH70880	Soybean	mitochondrion	61.97	62.28
KRH75029	Soybean	mitochondrion	61.65	61.85
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	10.36	58.72
PGSC0003DMT400072788	Potato	mitochondrion	57.44	57.54
Solyc05g012390.2.1	Tomato	nucleus	56.96	57.05
VIT_07s0005g04980.t01	Wine grape	cytosol	17.15	55.5
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	16.67	52.02
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	13.92	46.49

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra024715	EnsemblPlants:Bra024715.1	EnsemblPlants:Bra024715.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4E7G0	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025427A8	:	:	:	:

Description

AT1G26460 (E=3e-305) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:23377805..23380510

Molecular Weight (calculated)

69343.1 Da

IEP (calculated)

7.447

GRAVY (calculated)

-0.280

Length

618 amino acids

Sequence
(BLAST)

001: MSSHLFFRSR ISLLRTLKPN HHAATRTISG TPFLSQDPQL ATESTDHEST TLPPNPATGS PLYQENWRSP IPNSPSFSQS LVPMGFLNQA PAARIRALSE
101: TLDMISLLNM FADWTASQRW SDMKQLFEFW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SPSDMLDLVA MMDDFSVAPN TASYNLVLKA MHQAKETEVA
201: EKLLNRMLIS GKDESRPDDE SYDLVIGMMF SNGENDKAMQ LLDIALKSGY MLSTTVFSEC VRSCVAKGRT DTLVSIIERC KSLDRNKSLC PSWILCTYMA
301: EVATQEDNGK LAFYAFEFMY NWINRGEMAR PSVLLSVDEG LVVSALATAA RTCNPTLIDG SWMILKRSLR GKKAANPATY VAKINAYASL GNLQKAFVAL
401: HEFENAYKDA EKEVKEEMLS PFTSLYPLVV ACSKKGFETL DEVYFQLETL SKGDTPYKSV AALNCIVLGC ANTWDLDRAY QTFDAISASF GLTPNIDSYN
501: ALIYAFGKVK KTPEATRVYS HLVGEGVKPD ARTFSLLVDA HLVNRDPKSA LTVIDDMIKA GFEPSKETLK KLRRRCIREL DNENDEKVES LAKKFQIRMG
601: SENRRNMLFN MDYSRVRA

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.