Factsheet for VIT_18s0001g14600.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g04430.t01	Wine grape	cytosol	39.46	65.77
VIT_07s0005g04980.t01	Wine grape	cytosol	45.95	44.5
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	45.41	42.42
VIT_01s0011g00580.t01	Wine grape	mitochondrion	88.11	26.46
KRH70880	Soybean	mitochondrion	57.3	17.24
KRH75029	Soybean	mitochondrion	56.76	17.05
GSMUA_Achr1P13560_001	Banana	mitochondrion	55.14	16.64
Solyc05g012390.2.1	Tomato	nucleus	51.35	15.4
PGSC0003DMT400072788	Potato	mitochondrion	51.35	15.4
AT1G26460.1	Thale cress	mitochondrion	49.73	14.6
Bra024715.1-P	Field mustard	mitochondrion	46.49	13.92
CDY16159	Canola	mitochondrion	46.49	13.92
CDX85021	Canola	mitochondrion	45.95	13.87
Zm00001d006769_P001	Maize	mitochondrion	44.32	13.27
EER97491	Sorghum	plastid	43.78	13.15
Zm00001d022049_P001	Maize	mitochondrion	43.24	12.95
Os07t0599000-01	Rice	mitochondrion	42.7	12.68
TraesCS2B01G207000.1	Wheat	cytosol	31.89	11.32
TraesCS2D01G188400.1	Wheat	cytosol	31.89	11.32
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	32.43	11.32
GSMUA_Achr2P06170_001	Banana	plastid	16.76	5.69
VIT_13s0019g01590.t01	Wine grape	cytosol	2.7	5.0
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	0.0	0.0

Protein Annotations

ArrayExpress:VIT_18s0001g14600	EMBL:FN595227	EnsemblPlants:VIT_18s0001g14600.t01	EnsemblPlantsGene:VIT_18s0001g14600	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813
ProteinID:CBI19894	ProteinID:CBI19894.3	SEG:seg	UniParc:UPI0001BE1D0D	UniProt:E0CQ89	MapMan:35.1

Description

No Description!

Coordinates

chr18:-:12645229..12650755

Molecular Weight (calculated)

20897.7 Da

IEP (calculated)

7.856

GRAVY (calculated)

0.143

Length

185 amino acids

Sequence
(BLAST)

001: MASQMAILSR ARKTLLKTLN HHNNPFKASI STFTFLSLEA QLVEPSLPPP SPTPLPPNPA SGSPLYKYFL WMDLYFIYIR MLQTGKESMP DDESYELVVG
101: MLFLTDQIDA ALRYVDLTLK SGYMLSMRVF VECVRSCVNK GRLDALVSII ERCKTMDQNK ALSPSWNMCI FITDIAILSA HVSCF

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.