Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d006769_P001 | Maize | mitochondrion | 91.26 | 91.26 |
| EER97491 | Sorghum | plastid | 89.81 | 90.1 |
| TraesCS2D01G188400.1 | Wheat | cytosol | 65.53 | 77.74 |
| TraesCS2B01G207000.1 | Wheat | cytosol | 65.05 | 77.16 |
| Os07t0599000-01 | Rice | mitochondrion | 75.24 | 74.64 |
| HORVU2Hr1G033970.2 | Barley | cytosol, mitochondrion | 62.95 | 73.4 |
| GSMUA_Achr1P13560_001 | Banana | mitochondrion | 61.81 | 62.32 |
| Bra012457.1-P | Field mustard | cytosol | 6.63 | 57.75 |
| CDY40249 | Canola | cytosol | 6.63 | 57.75 |
| VIT_08s0032g01120.t01 | Wine grape | cytosol, mitochondrion | 10.03 | 56.88 |
| VIT_01s0011g00580.t01 | Wine grape | mitochondrion | 55.5 | 55.68 |
| PGSC0003DMT400072788 | Potato | mitochondrion | 54.69 | 54.78 |
| Solyc05g012390.2.1 | Tomato | nucleus | 54.37 | 54.46 |
| KRH75029 | Soybean | mitochondrion | 53.56 | 53.73 |
| KRH70880 | Soybean | mitochondrion | 53.4 | 53.66 |
| VIT_07s0005g04980.t01 | Wine grape | cytosol | 16.02 | 51.83 |
| VIT_13s0019g01590.t01 | Wine grape | cytosol | 8.25 | 51.0 |
| AT1G26460.1 | Thale cress | mitochondrion | 51.62 | 50.63 |
| VIT_10s0003g05560.t01 | Wine grape | cytosol, plastid, vacuole | 15.86 | 49.49 |
| CDY72152 | Canola | cytosol | 4.05 | 47.17 |
| GSMUA_Achr2P06170_001 | Banana | plastid | 39.64 | 44.95 |
| VIT_18s0001g14600.t01 | Wine grape | mitochondrion, plastid | 12.95 | 43.24 |
| VIT_11s0016g04430.t01 | Wine grape | cytosol | 7.28 | 40.54 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A1D6IIX9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | ProteinID:ONM59421.1 | ProteinID:ONM59424.1 | ProteinID:ONM59425.1 | PFAM:PF01535 |
| PFAM:PF13041 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF813 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000221E0A3 | EnsemblPlantsGene:Zm00001d022049 | EnsemblPlants:Zm00001d022049_P001 | EnsemblPlants:Zm00001d022049_T001 | SEG:seg |
Description
Pentatricopeptide repeat-containing protein mitochondrial
Coordinates
chr7:+:168873298..168877745
Molecular Weight (calculated)
68461.7 Da
IEP (calculated)
6.907
GRAVY (calculated)
-0.202
Length
618 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAATSL LIRHNRNPHL LLLRAAISSS RALSQQPELS PDPTTGAPDP AGAAPLPPNP STGSPLYSQN WRNPAAANPP SSLLPTVAAG SSFGAQHRMA
101: AFYDKPDAAG LKETFAKYMA EQRWEDMKLL FDHWVRSLDA ATGKPNHPDV DLFNHYLRAN LMTGAVPHEM LDLADHMREF ELEPNSASYN LVLKSMVADK
201: ESYGAEKLIE RMLQTGTVPD EESYNLVVGL LIRQNLVDSS LKYLDLMLKS GYTPSLTVFT DYIQACVRSG RLDTLTSIIQ KCKTADKIKV LCPQWAWCID
301: ISEAAFEANN SKLALFALEF LARWIVRGEN VKPPVQLSVN EGLVISALSA AGRTFSTDLL NAAWSLLRKS LRQKRAPTPE TYLAKIYAHS SIGQLQRAFG
401: TLHEFENAYG NSKDVDLELF SPFTSLHPLV VACCKDGFST LDLVYVQLEN LSHADPPYKS VAALNCVILG CANIWDINRA YETFVAIKEK FELSPDIHSY
501: NALLCAFGKL KQTGEACNVF QHVLTLGVKP NATTYSRLVD AHLANKDPKA ALAIIDEMVD AGFTPSKDTL RKVRRRCSRE SDFDSDEKVQ SLAKQFNYRM
601: GGENRREMLY SIEYNPVY
101: AFYDKPDAAG LKETFAKYMA EQRWEDMKLL FDHWVRSLDA ATGKPNHPDV DLFNHYLRAN LMTGAVPHEM LDLADHMREF ELEPNSASYN LVLKSMVADK
201: ESYGAEKLIE RMLQTGTVPD EESYNLVVGL LIRQNLVDSS LKYLDLMLKS GYTPSLTVFT DYIQACVRSG RLDTLTSIIQ KCKTADKIKV LCPQWAWCID
301: ISEAAFEANN SKLALFALEF LARWIVRGEN VKPPVQLSVN EGLVISALSA AGRTFSTDLL NAAWSLLRKS LRQKRAPTPE TYLAKIYAHS SIGQLQRAFG
401: TLHEFENAYG NSKDVDLELF SPFTSLHPLV VACCKDGFST LDLVYVQLEN LSHADPPYKS VAALNCVILG CANIWDINRA YETFVAIKEK FELSPDIHSY
501: NALLCAFGKL KQTGEACNVF QHVLTLGVKP NATTYSRLVD AHLANKDPKA ALAIIDEMVD AGFTPSKDTL RKVRRRCSRE SDFDSDEKVQ SLAKQFNYRM
601: GGENRREMLY SIEYNPVY
001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.