Factsheet for VIT_01s0011g00580.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g01590.t01	Wine grape	cytosol	15.42	95.0
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	26.46	88.11
VIT_07s0005g04980.t01	Wine grape	cytosol	27.11	87.43
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	15.1	85.32
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	26.79	83.33
VIT_11s0016g04430.t01	Wine grape	cytosol	13.15	72.97
GSMUA_Achr1P13560_001	Banana	mitochondrion	69.32	69.66
KRH70880	Soybean	mitochondrion	68.02	68.13
KRH75029	Soybean	mitochondrion	67.69	67.69
CDX85021	Canola	mitochondrion	65.1	65.42
Bra024715.1-P	Field mustard	mitochondrion	65.26	65.05
CDY16159	Canola	mitochondrion	65.26	65.05
AT1G26460.1	Thale cress	mitochondrion	66.4	64.92
PGSC0003DMT400072788	Potato	mitochondrion	64.45	64.34
Solyc05g012390.2.1	Tomato	nucleus	64.12	64.02
TraesCS2D01G188400.1	Wheat	cytosol	52.27	61.8
TraesCS2B01G207000.1	Wheat	cytosol	52.27	61.8
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	51.3	59.62
Os07t0599000-01	Rice	mitochondrion	57.14	56.5
EER97491	Sorghum	plastid	56.01	56.01
Zm00001d006769_P001	Maize	mitochondrion	56.01	55.83
Zm00001d022049_P001	Maize	mitochondrion	55.68	55.5
GSMUA_Achr2P06170_001	Banana	plastid	39.29	44.4

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100249185	wikigene:100249185	MapMan:35.1	ProteinID:CBI27281	ProteinID:CBI27281.3
ProteinID:CCB56342	ProteinID:CCB56342.1	UniProt:D7T9V9	EMBL:FN595752	EMBL:FN595998	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0016788	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100249185	wikigene:LOC100249185	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001BE2D9E	ArrayExpress:VIT_01s0011g00580	EnsemblPlantsGene:VIT_01s0011g00580	EnsemblPlants:VIT_01s0011g00580.t01	unigene:Vvi.7528
RefSeq:XP_002274321	RefSeq:XP_002274321.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:529787..543820

Molecular Weight (calculated)

69360.4 Da

IEP (calculated)

7.518

GRAVY (calculated)

-0.209

Length

616 amino acids

Sequence
(BLAST)

001: MASQMAILSR ARKTLLKTLN HHNNPFKASI STFTFLSQEP QLAEPSLPPP SPTPLPPNPA SGSPLYNENW RSPIPQAQSI IPLGFLHQSS SSRLQALSQT
101: LDVPSLMNVF ADWMTSQRWA DMNQLFEFWI RSLDKNGKPN KPDVNLYNHY LRAKLMIGAS AGELLDLVAQ MEDYAIIPNT ASFNLVLKAM YQARETEAAE
201: KLFQRMLQTG KESMPDDESY ELVVGMLFLT DQIDAALRYV DLTLKSGYML SMRVFAECVR SCVNKGRLDA LVSIIERCKT MDQNKALSPS WNMCIFIADI
301: AMQEDNSKLA FYALEFMARW IARGENARGP VLLSVDEGLV VSALGTAGRT YSSTLLDASW AILRRSLRQK KAPQPESYLA KIYADAALGN LQRAFSTLHE
401: FETAYRNSPK EAEEDIFSPF TSLHPLVMAS SKKGFETLDT VYFQLENLSR ADPPYKSVAA LNCVILGCAN IWDLDRAYQT FEAIGSSFGL TPDIHSYNAL
501: MYAFGKLKKT FEASRVFEHL TSLGIKPNAM SFSLLVDAHL INRDQKAALS VIEEMINAGF APSKEILKKV RRRCIREMDY ESNDQVESLA RKFKIRMGTE
601: NRRDMLFNLA YNTEYA

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.