Factsheet for VIT_07s0005g04980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	93.19	89.9
VIT_11s0016g04430.t01	Wine grape	cytosol	34.03	58.56
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	44.5	45.95
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	24.61	43.12
VIT_01s0011g00580.t01	Wine grape	mitochondrion	87.43	27.11
TraesCS2B01G207000.1	Wheat	cytosol	52.36	19.19
TraesCS2D01G188400.1	Wheat	cytosol	52.36	19.19
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	52.88	19.06
KRH75029	Soybean	mitochondrion	61.26	18.99
KRH70880	Soybean	mitochondrion	60.73	18.86
GSMUA_Achr1P13560_001	Banana	mitochondrion	60.21	18.76
PGSC0003DMT400072788	Potato	mitochondrion	56.54	17.5
Solyc05g012390.2.1	Tomato	nucleus	56.54	17.5
AT1G26460.1	Thale cress	mitochondrion	57.07	17.3
Bra024715.1-P	Field mustard	mitochondrion	55.5	17.15
CDY16159	Canola	mitochondrion	55.5	17.15
CDX85021	Canola	mitochondrion	54.97	17.13
Zm00001d006769_P001	Maize	mitochondrion	54.45	16.83
EER97491	Sorghum	plastid	53.4	16.56
Zm00001d022049_P001	Maize	mitochondrion	51.83	16.02
Os07t0599000-01	Rice	mitochondrion	50.79	15.57
GSMUA_Achr2P06170_001	Banana	plastid	36.65	12.84
VIT_13s0019g01590.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:CCB60213	ProteinID:CCB60213.1	UniProt:F6HZU7	EMBL:FN596502	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	PANTHER:PTHR24015
PANTHER:PTHR24015:SF813	UniParc:UPI000210946F	ArrayExpress:VIT_07s0005g04980	EnsemblPlantsGene:VIT_07s0005g04980	EnsemblPlants:VIT_07s0005g04980.t01	:

Description

No Description!

Coordinates

chr7:+:8285659..8286528

Molecular Weight (calculated)

21457.1 Da

IEP (calculated)

5.721

GRAVY (calculated)

0.070

Length

191 amino acids

Sequence
(BLAST)

001: MPDDESYELV VGMLFLTDQI DVALRYVDLT LKSGYMLSMR VFAECVRSCV NKGRLDALVS IIERCKTMDQ NKALSPSWNM CIFIADIAIC IMGDPTRSLR
101: QKKAPQPESY LAKIYADAAL GNLQRAFSTL HEFETAYRNS PKEAEEDIFS PFTSLHPLVM ASSRKGFETL DTVCLLICKS FCSHNSFIIV G

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.