CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024715.1-P	Field mustard	mitochondrion	99.51	99.51
CDX85021	Canola	mitochondrion	96.28	97.06
AT1G26460.1	Thale cress	mitochondrion	82.85	81.27
CDY40249	Canola	cytosol	8.74	76.06
VIT_13s0019g01590.t01	Wine grape	cytosol	11.49	71.0
VIT_01s0011g00580.t01	Wine grape	mitochondrion	65.05	65.26
CDY72152	Canola	cytosol	5.5	64.15
KRH70880	Soybean	mitochondrion	61.81	62.11
KRH75029	Soybean	mitochondrion	61.49	61.69
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	10.36	58.72
PGSC0003DMT400072788	Potato	mitochondrion	57.44	57.54
Solyc05g012390.2.1	Tomato	nucleus	56.96	57.05
VIT_07s0005g04980.t01	Wine grape	cytosol	17.15	55.5
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	16.67	52.02
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	13.92	46.49

Protein Annotations

EnsemblPlants:CDY16159	EnsemblPlantsGene:GSBRNA2T00090600001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF813	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY16159	ProteinID:CDY16159.1
TIGRFAMs:TIGR00756	UniParc:UPI0004EF213C	UniProt:A0A078FTA2	MapMan:35.1	:	:

Description

BnaA09g28930DBnaA09g28930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTA2]

Coordinates

chrLK032061:+:250928..254122

Molecular Weight (calculated)

69278.1 Da

IEP (calculated)

7.690

GRAVY (calculated)

-0.274

Length

618 amino acids

Sequence
(BLAST)

001: MSSHLFLRSR ISLLRTLKPN HHAATRTISG TPFLSQDPQL ATESTDHEST TLPPNPATGS PLYQENWRSP IPNSPSFSQS LVPMGFLNQA PAARIRALSE
101: TLDMISLLNM FADWTASQRW SDMKQLFEFW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SPSDMLDLVA MMDDFSVAPN TASYNLVLKA MHQAKETEVA
201: EKLLNRMLIS GKDESRPDDE SYDLVIGMMF SNGENDKAMQ LLDIALKSGY MLSTTVFSEC VRSCVAKGRT DTLVSIIERC KSLDRNKSLC PSWILCTYMA
301: EVATQEDNGK LAFYAFEFMY NWINRGEMAR PSVLLSVDEG LVVSALATAA RTCNPTLIDG SWMILKRSLR GKKAANPAAY VAKINAYASL GNLQKAFVAL
401: HEFENAYKDA EKEVKEEMLS PFTSLYPLVV ACSKKGFETL DEVYFQLETL SKGDTPYKSV AALNCIVLGC ANTWDLDRAY QTFDAISASF GLTPNIDSYN
501: ALIYAFGKVK KTPEATRVYS HLVGEGVKPD ARTFSLLVDA HLVNRDPKSA LTVIDNMIKA GFEPSKETLK KLRRRCIREL DNENDEKVES LAKKFQIRMG
601: SENRRNMLFN MDYSRVRA

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.