Factsheet for VIT_13s0019g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g00580.t01	Wine grape	mitochondrion	95.0	15.42
GSMUA_Achr1P13560_001	Banana	mitochondrion	77.0	12.56
AT1G26460.1	Thale cress	mitochondrion	74.0	11.75
Bra024715.1-P	Field mustard	mitochondrion	71.0	11.49
CDY16159	Canola	mitochondrion	71.0	11.49
CDX85021	Canola	mitochondrion	70.0	11.42
KRH70880	Soybean	mitochondrion	70.0	11.38
KRH75029	Soybean	mitochondrion	70.0	11.36
TraesCS2D01G188400.1	Wheat	cytosol	59.0	11.32
TraesCS2B01G207000.1	Wheat	cytosol	59.0	11.32
PGSC0003DMT400072788	Potato	mitochondrion	61.0	9.89
Solyc05g012390.2.1	Tomato	nucleus	61.0	9.89
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	51.0	9.62
Os07t0599000-01	Rice	mitochondrion	58.0	9.31
EER97491	Sorghum	plastid	52.0	8.44
Zm00001d006769_P001	Maize	mitochondrion	52.0	8.41
Zm00001d022049_P001	Maize	mitochondrion	51.0	8.25
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	5.0	2.7
GSMUA_Achr2P06170_001	Banana	plastid	5.0	0.92
VIT_07s0005g04980.t01	Wine grape	cytosol	0.0	0.0
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	0.0	0.0
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	0.0	0.0
VIT_11s0016g04430.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_13s0019g01590	EMBL:FN595998	EnsemblPlants:VIT_13s0019g01590.t01	EnsemblPlantsGene:VIT_13s0019g01590	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813
ProteinID:CCB56343	ProteinID:CCB56343.1	UniParc:UPI0002107FEB	UniProt:F6HNX3	MapMan:35.1	:

Description

No Description!

Coordinates

chr13:-:3093160..3093507

Molecular Weight (calculated)

11691.1 Da

IEP (calculated)

4.721

GRAVY (calculated)

-0.190

Length

100 amino acids

Sequence
(BLAST)

1: MNVFADWMTS QQWVDMNQLF EFWIWSLDKN GKPNKPDVNL YNHYLRAKLM IGASAGELLD LVAQMEDYAI IPNTASFNLV LKAMYQARET EAVEKLFQRL

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.