Factsheet for Solyc05g012390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072788	Potato	mitochondrion	97.73	97.73
VIT_01s0011g00580.t01	Wine grape	mitochondrion	64.02	64.12
GSMUA_Achr1P13560_001	Banana	mitochondrion	61.1	61.5
VIT_13s0019g01590.t01	Wine grape	cytosol	9.89	61.0
KRH75029	Soybean	mitochondrion	59.48	59.58
KRH70880	Soybean	mitochondrion	58.67	58.86
TraesCS2D01G188400.1	Wheat	cytosol	48.62	57.58
TraesCS2B01G207000.1	Wheat	cytosol	48.46	57.39
CDX85021	Canola	mitochondrion	56.89	57.26
AT1G26460.1	Thale cress	mitochondrion	58.18	56.98
Bra024715.1-P	Field mustard	mitochondrion	57.05	56.96
CDY16159	Canola	mitochondrion	57.05	56.96
VIT_07s0005g04980.t01	Wine grape	cytosol	17.5	56.54
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	48.14	56.04
Zm00001d006769_P001	Maize	mitochondrion	55.11	55.02
EER97491	Sorghum	plastid	54.46	54.55
Zm00001d022049_P001	Maize	mitochondrion	54.46	54.37
Os07t0599000-01	Rice	mitochondrion	54.62	54.09
VIT_10s0003g05560.t01	Wine grape	cytosol, plastid, vacuole	16.86	52.53
VIT_18s0001g14600.t01	Wine grape	mitochondrion, plastid	15.4	51.35
VIT_08s0032g01120.t01	Wine grape	cytosol, mitochondrion	8.91	50.46
GSMUA_Achr2P06170_001	Banana	plastid	35.98	40.73

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4BXW2	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc05g012390.2	EnsemblPlants:Solyc05g012390.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002765697
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:5649249..5653665

Molecular Weight (calculated)

69426.4 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.224

Length

617 amino acids

Sequence
(BLAST)

001: MAILIRSRPL IRTLTNFKTI TTVPFLSQEP QLAGTPPENT TPLPPNPSSG SPLYNENWRS PFAATSQSVS SSVVPLGFLR QSPAARMQAM SESLDVEGLM
101: NLFADWVTTQ RWEDMKQVFE LWIRSLDRNG KPNKPDANLF NYYLRANLMM GATADDLLGL ASQMEEYGLV ANTASHNLIL KAMFQSGEPL SWADKSVKLL
201: ERMIATGVEY KEALPDEESY DLVTGLLFKA NLIDDALKYI DSALKSGYKL SMNVFNECVR SCIYSNRLDA LVSIIEKCKK TDQNKGLLPP WNMCTHLADS
301: ALQADNSELA FTSLEFFVKW IVRGETVKPP VLLSVGEGLL VAALGTAGRT YNVKLLNGAW EVLKRSLRQM RIPNPESFLA KMYAHASLGQ LQNAFATLHE
401: FEKAYASSKD ESAEELFSPF TSLNPLAVAC CRNGFVTLDS VYYQLENLSR ADPPFKSLAA LNCVILGCAN IWDIDRAYQT FAAIESTFGL TPDIHSYNAL
501: IYAFGKLGKR DEATKVYEHF MDLGVKPNEM TYSLLVDAHL IKREPKAALS VVDEMVHAQY KPSKEMLKKI RRRCTREMDY ESDDRVEELT KKFNIRMGAE
601: NRRNMLFNLR YNMEYSG

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.