Subcellular Localization
min:
: max
Winner_takes_all: cytosol, mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G188400.1 | Wheat | cytosol | 89.62 | 91.17 |
| TraesCS2B01G207000.1 | Wheat | cytosol | 89.43 | 90.98 |
| Os07t0599000-01 | Rice | mitochondrion | 77.55 | 65.97 |
| EER97491 | Sorghum | plastid | 74.72 | 64.29 |
| Zm00001d006769_P001 | Maize | mitochondrion | 73.77 | 63.27 |
| Zm00001d022049_P001 | Maize | mitochondrion | 73.4 | 62.95 |
| Bra012457.1-P | Field mustard | cytosol | 7.92 | 59.15 |
| CDY40249 | Canola | cytosol | 7.92 | 59.15 |
| GSMUA_Achr1P13560_001 | Banana | mitochondrion | 67.17 | 58.08 |
| VIT_07s0005g04980.t01 | Wine grape | cytosol | 19.06 | 52.88 |
| VIT_08s0032g01120.t01 | Wine grape | cytosol, mitochondrion | 10.75 | 52.29 |
| VIT_01s0011g00580.t01 | Wine grape | mitochondrion | 59.62 | 51.3 |
| VIT_13s0019g01590.t01 | Wine grape | cytosol | 9.62 | 51.0 |
| VIT_10s0003g05560.t01 | Wine grape | cytosol, plastid, vacuole | 18.87 | 50.51 |
| KRH70880 | Soybean | mitochondrion | 58.3 | 50.24 |
| KRH75029 | Soybean | mitochondrion | 58.11 | 50.0 |
| PGSC0003DMT400072788 | Potato | mitochondrion | 56.6 | 48.62 |
| Solyc05g012390.2.1 | Tomato | nucleus | 56.04 | 48.14 |
| VIT_11s0016g04430.t01 | Wine grape | cytosol | 10.0 | 47.75 |
| AT1G26460.1 | Thale cress | mitochondrion | 55.66 | 46.83 |
| CDY72152 | Canola | cytosol | 4.34 | 43.4 |
| GSMUA_Achr2P06170_001 | Banana | plastid | 43.77 | 42.57 |
| VIT_18s0001g14600.t01 | Wine grape | mitochondrion, plastid | 11.32 | 32.43 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A287HNE1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:HORVU2Hr1G033970 | EnsemblPlants:HORVU2Hr1G033970.2 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 | PFAM:PF13041 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF813 | InterPro:Pentatricopeptide_repeat | SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000B46FEE8 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:136224426..136228119
Molecular Weight (calculated)
59314.2 Da
IEP (calculated)
7.266
GRAVY (calculated)
-0.206
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNRREAPSS CGFFGPSEGL FRHCALLSRG NGLKSFEIFX LFELWVRSLD AATGKPNRPD VDLFNHYLRA NLMSGALPHE MLDLADQMRE FHIVPNTASY
101: NLVLKTMVKA REVQGAEKLV ERMLQTGIVP DDESYNLVVD LLLKHNRADS AFKYLELMLK SGYAVSSPVF AEYVRVCVKS GRLDTLASII EKCKATEKNK
201: VLCPQWAWCI DIAEAAFEAN NSKLGMFGLE FLARWIAHGE GSKPPTHRSV DEGLVLSAFS AAGRTCSSDL LNAAWSILRK SLRQKRAPMP ETYLAKIYAH
301: SSIGQLQRAF GTLREFENAY RNFEGIDKEL FSPFTSLQPL VVACCKDGFT TLDSVYVQLE NLSTADPPYK SVAALNCVIL GCANIWDLER AYETFEAMKE
401: KFGLTPDIHS YNALLHAFGK LKKTEEASNV FQHLVSLDDV KPNATTYSLL VDAHLVNRDP KAALAVLDEM VDVGFTPSKE TLKKVRRRCS RESDFGSDEK
501: LQSLCKRLNL RMGGEGRREM LYNIEYSAEY
101: NLVLKTMVKA REVQGAEKLV ERMLQTGIVP DDESYNLVVD LLLKHNRADS AFKYLELMLK SGYAVSSPVF AEYVRVCVKS GRLDTLASII EKCKATEKNK
201: VLCPQWAWCI DIAEAAFEAN NSKLGMFGLE FLARWIAHGE GSKPPTHRSV DEGLVLSAFS AAGRTCSSDL LNAAWSILRK SLRQKRAPMP ETYLAKIYAH
301: SSIGQLQRAF GTLREFENAY RNFEGIDKEL FSPFTSLQPL VVACCKDGFT TLDSVYVQLE NLSTADPPYK SVAALNCVIL GCANIWDLER AYETFEAMKE
401: KFGLTPDIHS YNALLHAFGK LKKTEEASNV FQHLVSLDDV KPNATTYSLL VDAHLVNRDP KAALAVLDEM VDVGFTPSKE TLKKVRRRCS RESDFGSDEK
501: LQSLCKRLNL RMGGEGRREM LYNIEYSAEY
001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.