Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY40249 | Canola | cytosol | 75.47 | 56.34 |
| CDX85021 | Canola | mitochondrion | 64.15 | 5.55 |
| CDY16159 | Canola | mitochondrion | 64.15 | 5.5 |
| HORVU2Hr1G033970.2 | Barley | cytosol, mitochondrion | 43.4 | 4.34 |
| TraesCS2B01G207000.1 | Wheat | cytosol | 41.51 | 4.22 |
| TraesCS2D01G188400.1 | Wheat | cytosol | 41.51 | 4.22 |
| GSMUA_Achr1P13560_001 | Banana | mitochondrion | 47.17 | 4.08 |
| Zm00001d006769_P001 | Maize | mitochondrion | 47.17 | 4.05 |
| Zm00001d022049_P001 | Maize | mitochondrion | 47.17 | 4.05 |
| Os07t0599000-01 | Rice | mitochondrion | 47.17 | 4.01 |
| EER97491 | Sorghum | plastid | 45.28 | 3.9 |
| GSMUA_Achr2P06170_001 | Banana | plastid | 39.62 | 3.85 |
Protein Annotations
| EnsemblPlants:CDY72152 | EnsemblPlantsGene:GSBRNA2T00025236001 | ProteinID:CDY72152 | ProteinID:CDY72152.1 | SEG:seg | UniParc:UPI0004EDBBA1 |
| UniProt:A0A078K2M6 | MapMan:35.2 | : | : | : | : |
Description
BnaCnng76230DBnaCnng76230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K2M6]
Coordinates
chrLK049265:+:299..460
Molecular Weight (calculated)
6270.5 Da
IEP (calculated)
9.308
GRAVY (calculated)
-0.857
Length
53 amino acids
Sequence
(BLAST)
(BLAST)
1: TNSWFLDQQI NAGIEPSKET LENLRRRCLR ELDYKKDVQV DSLAKKFQIR MGS
001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.