CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012457.1-P	Field mustard	cytosol	98.59	98.59
CDY72152	Canola	cytosol	56.34	75.47
CDX85021	Canola	mitochondrion	78.87	9.14
CDY16159	Canola	mitochondrion	76.06	8.74
HORVU2Hr1G033970.2	Barley	cytosol, mitochondrion	59.15	7.92
TraesCS2B01G207000.1	Wheat	cytosol	57.75	7.87
TraesCS2D01G188400.1	Wheat	cytosol	57.75	7.87
GSMUA_Achr2P06170_001	Banana	plastid	53.52	6.97
GSMUA_Achr1P13560_001	Banana	mitochondrion	59.15	6.85
Zm00001d006769_P001	Maize	mitochondrion	59.15	6.8
Os07t0599000-01	Rice	mitochondrion	59.15	6.74
EER97491	Sorghum	plastid	57.75	6.66
Zm00001d022049_P001	Maize	mitochondrion	57.75	6.63

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:A0A078HSH1	UniProt:A0A078HSH1	EnsemblPlants:CDY40249	ProteinID:CDY40249
ProteinID:CDY40249.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00069403001	InterPro:IPR002885
InterPro:IPR011990	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF813	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE8302	:	:	:	:

Description

BnaA07g09510DBnaA07g09510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSH1]

Coordinates

chrLK032467:+:16487..16784

Molecular Weight (calculated)

8215.9 Da

IEP (calculated)

9.786

GRAVY (calculated)

-0.627

Length

71 amino acids

Sequence
(BLAST)

1: MRTYSLLVDA HLINRDPRSA MAVSDDMINA GFEPSKETLK NLRRRCLREL DYKKDAQVES LAKNFQIRMG S

Best Arabidopsis Sequence Match ( AT1G26460.1 )
(BLAST)

001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.