Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16159 | Canola | mitochondrion | 97.06 | 96.28 |
| AT1G26460.1 | Thale cress | mitochondrion | 82.87 | 80.63 |
| CDY40249 | Canola | cytosol | 9.14 | 78.87 |
| VIT_13s0019g01590.t01 | Wine grape | cytosol | 11.42 | 70.0 |
| VIT_01s0011g00580.t01 | Wine grape | mitochondrion | 65.42 | 65.1 |
| CDY72152 | Canola | cytosol | 5.55 | 64.15 |
| KRH70880 | Soybean | mitochondrion | 62.32 | 62.11 |
| KRH75029 | Soybean | mitochondrion | 61.83 | 61.53 |
| VIT_08s0032g01120.t01 | Wine grape | cytosol, mitochondrion | 10.28 | 57.8 |
| PGSC0003DMT400072788 | Potato | mitochondrion | 57.75 | 57.37 |
| Solyc05g012390.2.1 | Tomato | nucleus | 57.26 | 56.89 |
| VIT_07s0005g04980.t01 | Wine grape | cytosol | 17.13 | 54.97 |
| VIT_10s0003g05560.t01 | Wine grape | cytosol, plastid, vacuole | 16.64 | 51.52 |
| VIT_18s0001g14600.t01 | Wine grape | mitochondrion, plastid | 13.87 | 45.95 |
Protein Annotations
| EnsemblPlants:CDX85021 | EnsemblPlantsGene:GSBRNA2T00142456001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | ncoils:Coil | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF813 | PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | ProteinID:CDX85021 | ProteinID:CDX85021.1 |
| TIGRFAMs:TIGR00756 | UniParc:UPI0004EDCCC5 | MapMan:35.1 | : | : | : |
Description
BnaC05g20340D
Coordinates
chrLK031839:+:1570161..1572823
Molecular Weight (calculated)
68837.5 Da
IEP (calculated)
7.155
GRAVY (calculated)
-0.271
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSHLFLRSR ISLLRTLKPN HHIRTISGTP SLYQDPQLAT DHESTTLPPN PATGSPLYQE NWRSPIPNSP SFSQSLVPMG FLNQAPAARI RALSETLDMI
101: SLLNMFADWT ASQRWSDMKQ LFEFWVRSLD KNGKPNKPDV NLYNHYLRAN LMMGAAPSDM LDLVAMMDDF SVAPNTASYN LVLKAMHQAK ETEVAEKLLN
201: RMLISGKDES RPDDESYDLV IGMLYSNGEN DKAMQLLDIA LKSGYMLSTT VFSECVRSCV AKGRTDTLVS IIERCKSLDR NKSLCPSWIL CTYMAEVATQ
301: EDNSKLAFYA FEFMYNWINR GEMARPSVLL SVDEGLVVSA LATAARTCNP TLIDGSWMIL KRSLRGKKAA NPAAYVAKIN AYASLGNLQK AFVALNEFEN
401: AYKDAEKEVK EEMLSPFTSL YPLVVACSKK GFETLDEVYF QLETLSKGDT PYKSVAALNC IVLGCANTWD LDRAYQTFDA ISASFGLTPN IDSYNALIYA
501: FGKVKKTPEA TRVYSHLVGE GVKPDARTFS LLVDAHLINR DPESALTVID DMIKAGFEPS KETLKKLRRR CIRELDNEND DKVESLAKKF QIRMGSENRR
601: NMLFNMDYSR VRA
101: SLLNMFADWT ASQRWSDMKQ LFEFWVRSLD KNGKPNKPDV NLYNHYLRAN LMMGAAPSDM LDLVAMMDDF SVAPNTASYN LVLKAMHQAK ETEVAEKLLN
201: RMLISGKDES RPDDESYDLV IGMLYSNGEN DKAMQLLDIA LKSGYMLSTT VFSECVRSCV AKGRTDTLVS IIERCKSLDR NKSLCPSWIL CTYMAEVATQ
301: EDNSKLAFYA FEFMYNWINR GEMARPSVLL SVDEGLVVSA LATAARTCNP TLIDGSWMIL KRSLRGKKAA NPAAYVAKIN AYASLGNLQK AFVALNEFEN
401: AYKDAEKEVK EEMLSPFTSL YPLVVACSKK GFETLDEVYF QLETLSKGDT PYKSVAALNC IVLGCANTWD LDRAYQTFDA ISASFGLTPN IDSYNALIYA
501: FGKVKKTPEA TRVYSHLVGE GVKPDARTFS LLVDAHLINR DPESALTVID DMIKAGFEPS KETLKKLRRR CIRELDNEND DKVESLAKKF QIRMGSENRR
601: NMLFNMDYSR VRA
001: MASHLFTRSR ISLLKTLKPN PFTSASPIRA ISGTPFLSQD PLLATESTDH DPSNHQSTST PLPPNPATGS PLYQENWRSP IPNTPSFNQS LVPLGFLNQA
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
101: PAPRIRALSE TLDMNSLLNM FADWTASQRW SDMKQLFEVW VRSLDKNGKP NKPDVNLYNH YLRANLMMGA SAGDMLDLVA PMEEFSVEPN TASYNLVLKA
201: MYQARETEAA MKLLERMLLL GKDSLPDDES YDLVIGMHFG VGKNDEAMKV MDTALKSGYM LSTSVFTECV RSCVAKGRTD TLVSIIERCK AVDRNKSLCP
301: SWILCNYIAE VAIQEDNSKL AFYAFEFMFK WITRGEMARP SVIFSVDEGL VVAGLASAAR TCSSSLVEGS WTILKQSLRG RKAANPASYI AKINAYASLG
401: NLQKAFTSLH ELESAYADSE KEVVEEMLSP FTSLYPLVVA CSKKGFETLD EVYFQLESLS QGDTPYKSVA ALNCIILGCA NTWDLDRAYQ TFEAISASFG
501: LTPNIDSYNA LLYAFGKVKK TFEATNVFEH LVSIGVKPDS RTYSLLVDAH LINRDPKSAL TVVDDMIKAG FEPSRETLKK LRRRCVREMD DENDDQVEAL
601: AKKFQIRMGS ENRRNMLFNI DYSRGRALNN
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.