Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0920200-01 | |
| Os02t0148500-01 | |
| Os04t0471400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58575.1 | Os02t0148500-01 | AT3G21175.1 | 21798944 |
| AT5G58575.1 | Os01t0920200-01 | AT3G27100.1 | 21798944 |
| AT5G58575.1 | Os04t0471400-01 | AT5G56250.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 63.1 | 74.68 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 62.57 | 74.05 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 60.96 | 73.55 |
| EES18037 | Sorghum | cytosol | 72.19 | 70.68 |
| Zm00001d038002_P001 | Maize | nucleus | 71.12 | 61.01 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 25.13 | 58.75 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 62.57 | 56.25 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 48.66 | 54.17 |
| PGSC0003DMT400078237 | Potato | nucleus | 49.2 | 52.27 |
| Bra006753.1-P | Field mustard | mitochondrion | 18.18 | 51.52 |
| KRH30221 | Soybean | cytosol | 48.13 | 49.72 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 46.52 | 48.07 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 37.43 | 43.48 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 44.38 | 43.01 |
| Solyc06g082160.2.1 | Tomato | plastid | 48.13 | 26.79 |
Protein Annotations
| EMBL:AK108857 | EnsemblPlants:Os05t0351500-01 | EnsemblPlantsGene:Os05g0351500 | EntrezGene:4338504 | Gene3D:3.30.160.60 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 |
| PFAM:PF08209 | ProteinID:AAV44077.1 | ProteinID:BAF17192.1 | ProteinID:BAS93540.1 | RefSeq:XP_015637870.1 | SEG:seg |
| UniParc:UPI0000454934 | UniProt:Q5W6G3 | MapMan:15.3.4.2.1 | : | : | : |
Description
Sgf11, transcriptional regulation family protein. (Os05t0351500-01)
Coordinates
chr5:-:16622355..16625788
Molecular Weight (calculated)
19261.3 Da
IEP (calculated)
6.009
GRAVY (calculated)
-0.375
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSTDAPVS PRSQFALACF EELLETAVVD VASECHRIAR LGLDRGVDAE EEELRAWAAR DHPGAEEGGG AVGGGGGNKG VVDVFGQVLP AVAADLVDCM
101: NCGRPVAAGR FAPHLEKCMG KGRKARTKTT RSSTAGRTRN NNGSAASSYS PYSSPAIANR ASLPNGVTDG SASVTGEDHS NHILPEP
101: NCGRPVAAGR FAPHLEKCMG KGRKARTKTT RSSTAGRTRN NNGSAASSYS PYSSPAIANR ASLPNGVTDG SASVTGEDHS NHILPEP
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.