Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65780 | Canola | cytosol, nucleus, plastid | 74.59 | 83.85 |
| Bra006753.1-P | Field mustard | mitochondrion | 27.07 | 74.24 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 62.43 | 67.26 |
| KRH30221 | Soybean | cytosol | 64.64 | 64.64 |
| PGSC0003DMT400078237 | Potato | nucleus | 61.88 | 63.64 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 24.86 | 56.25 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 58.56 | 54.92 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 46.41 | 53.16 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 46.41 | 53.16 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 45.3 | 52.9 |
| Os05t0351500-01 | Rice | cytosol | 48.07 | 46.52 |
| EES18037 | Sorghum | cytosol | 48.07 | 45.55 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 46.41 | 40.38 |
| Zm00001d038002_P001 | Maize | nucleus | 48.07 | 39.91 |
| Solyc06g082160.2.1 | Tomato | plastid | 60.77 | 32.74 |
Protein Annotations
| MapMan:15.3.4.2.1 | Gene3D:3.30.160.60 | EntrezGene:835971 | ProteinID:AED97071.1 | ProteinID:ANM70291.1 | ArrayExpress:AT5G58575 |
| EnsemblPlantsGene:AT5G58575 | RefSeq:AT5G58575 | TAIR:AT5G58575 | RefSeq:AT5G58575-TAIR-G | EnsemblPlants:AT5G58575.1 | TAIR:AT5G58575.1 |
| EMBL:AY039865 | EMBL:AY077659 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008150 | RefSeq:NP_001318831.1 | RefSeq:NP_200665.2 | PFAM:PF08209 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR15117 |
| PANTHER:PTHR15117:SF22 | UniProt:Q94BV2 | InterPro:SAGA_su_Sgf11 | UniParc:UPI00000A04DE | SEG:seg | : |
Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
Coordinates
chr5:+:23673533..23675643
Molecular Weight (calculated)
19678.0 Da
IEP (calculated)
7.411
GRAVY (calculated)
-0.592
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.