Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G58575.1 | EER88899 | AT3G21175.1 | 21798944 |
| AT5G58575.1 | KXG34000 | AT3G27100.1 | 21798944 |
| AT5G58575.1 | OQU81762 | AT5G56250.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038002_P001 | Maize | nucleus | 94.76 | 83.03 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 63.35 | 78.06 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 62.83 | 75.95 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 62.83 | 75.95 |
| Os05t0351500-01 | Rice | cytosol | 70.68 | 72.19 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 62.83 | 57.69 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 23.56 | 56.25 |
| Bra006753.1-P | Field mustard | mitochondrion | 18.32 | 53.03 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 46.07 | 52.38 |
| PGSC0003DMT400078237 | Potato | nucleus | 48.17 | 52.27 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 45.55 | 48.07 |
| KRH30221 | Soybean | cytosol | 45.55 | 48.07 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 39.27 | 46.58 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 40.84 | 40.41 |
| Solyc06g082160.2.1 | Tomato | plastid | 47.12 | 26.79 |
Protein Annotations
| EnsemblPlants:EES18037 | EnsemblPlantsGene:SORBI_3009G103700 | EntrezGene:8083748 | Gene3D:3.30.160.60 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 | PFAM:PF08209 |
| ProteinID:EES18037 | ProteinID:EES18037.1 | RefSeq:XP_002439607.1 | SEG:seg | unigene:Sbi.20755 | UniParc:UPI0001A88C37 |
| UniProt:C5YWB3 | MapMan:15.3.4.2.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr9:+:41597839..41604594
Molecular Weight (calculated)
19599.6 Da
IEP (calculated)
7.537
GRAVY (calculated)
-0.484
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSKDAPLS PRSQLALSCF EELLDCAVAD VASECHRIAR LGLDRSVDAE EEELRVWAAR AAAAAAGGDH HHHPGGGGAA EEGGSKGGVD VFGQTHPAIA
101: ADVVECMNCG RPVVAGRFAP HLEKCMGKGR RARTKITRSS TAGRTRSSNG SAATSYSPYP TTGNPNRASI PNGVTDGGSG SARGDYSNHA S
101: ADVVECMNCG RPVVAGRFAP HLEKCMGKGR RARTKITRSS TAGRTRSSNG SAATSYSPYP TTGNPNRASI PNGVTDGGSG SARGDYSNHA S
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.