Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 99.37 | 99.37 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 92.41 | 94.19 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 99.37 | 75.48 |
| Os05t0351500-01 | Rice | cytosol | 74.68 | 63.1 |
| EES18037 | Sorghum | cytosol | 75.95 | 62.83 |
| Zm00001d038002_P001 | Maize | nucleus | 75.32 | 54.59 |
| Bra006753.1-P | Field mustard | mitochondrion | 22.15 | 53.03 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 54.43 | 51.19 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 25.32 | 50.0 |
| PGSC0003DMT400078237 | Potato | nucleus | 53.8 | 48.3 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 48.73 | 47.83 |
| KRH30221 | Soybean | cytosol | 54.43 | 47.51 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 53.16 | 46.41 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 50.0 | 40.93 |
| Solyc06g082160.2.1 | Tomato | plastid | 52.53 | 24.7 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G224800.1 | EnsemblPlantsGene:TraesCS1D01G224800 | Gene3D:3.30.160.60 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 |
| PFAM:PF08209 | SEG:seg | MapMan:15.3.4.2.1 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:313292580..313295780
Molecular Weight (calculated)
16671.3 Da
IEP (calculated)
6.504
GRAVY (calculated)
-0.544
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSNDAPVS PRSQLVLSCF EELLDFAVAD VASECHRIAR LGLDRSVDAE EEELRLWAAR VAGDHPGAED GATRAAGGGG GNKGAPDVFG QTHPAIAADV
101: VDCMNCGRPV VAGRFAPHLE KCMGKGRKAR AKTTRSSTAG RNRNSNGEEH SNHTFQES
101: VDCMNCGRPV VAGRFAPHLE KCMGKGRKAR AKTTRSSTAG RNRNSNGEEH SNHTFQES
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.