Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006753.1-P | Field mustard | mitochondrion | 39.75 | 96.97 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 83.85 | 74.59 |
| PGSC0003DMT400078237 | Potato | nucleus | 65.84 | 60.23 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 62.11 | 59.52 |
| KRH30221 | Soybean | cytosol | 65.22 | 58.01 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 60.25 | 50.26 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 47.2 | 49.03 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 47.83 | 48.73 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 47.83 | 48.73 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 21.12 | 42.5 |
| EES18037 | Sorghum | cytosol | 46.58 | 39.27 |
| Os05t0351500-01 | Rice | cytosol | 43.48 | 37.43 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 47.83 | 37.02 |
| Zm00001d038002_P001 | Maize | nucleus | 46.58 | 34.4 |
| Solyc06g082160.2.1 | Tomato | plastid | 64.6 | 30.95 |
Protein Annotations
| EnsemblPlants:CDY65780 | EnsemblPlantsGene:GSBRNA2T00048211001 | Gene3D:3.30.160.60 | GO:A0A078JH49 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | ncoils:Coil | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 |
| PFAM:PF08209 | ProteinID:CDY65780 | ProteinID:CDY65780.1 | SEG:seg | UniParc:UPI0004EEBA5C | UniProt:A0A078JH49 |
| MapMan:15.3.4.2.1 | : | : | : | : | : |
Description
BnaA03g56240DSAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:A0A078JH49]
Coordinates
chrLK034948:-:1862..3183
Molecular Weight (calculated)
17726.7 Da
IEP (calculated)
7.458
GRAVY (calculated)
-0.654
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNAEDNKSS HDQLSSQVFL DLVDSVIADV ASECHRVARL GLDRDLEVVE EELRLSVEAR AKVADPSNNL ETNTKYVVDI FGQSHPPVAT EVFNCMNCGR
101: QIVAGRFAPH LERCMGKGRK ARAKATRSTT ASQNRNSRRN TSDNNQLASG PPGFEENVRK A
101: QIVAGRFAPH LERCMGKGRK ARAKATRSTT ASQNRNSRRN TSDNNQLASG PPGFEENVRK A
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.