Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 76.14 | 79.76 |
| KRH30221 | Soybean | cytosol | 77.27 | 75.14 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 60.23 | 65.84 |
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 69.89 | 63.73 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 63.64 | 61.88 |
| Bra006753.1-P | Field mustard | mitochondrion | 22.73 | 60.61 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 26.7 | 58.75 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 48.3 | 54.84 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 48.3 | 53.8 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 48.3 | 53.8 |
| Solyc06g082160.2.1 | Tomato | plastid | 98.86 | 51.79 |
| Os05t0351500-01 | Rice | cytosol | 52.27 | 49.2 |
| EES18037 | Sorghum | cytosol | 52.27 | 48.17 |
| Zm00001d038002_P001 | Maize | nucleus | 52.27 | 42.2 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 48.3 | 40.87 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078237 | EnsemblPlantsGene:PGSC0003DMG400030447 | EntrezGene:102594127 | Gene3D:3.30.160.60 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 | PFAM:PF08209 |
| PGSC:PGSC0003DMG400030447 | RefSeq:XP_006350852.1 | RefSeq:XP_006350853.1 | SEG:seg | UniParc:UPI000294F6F4 | UniProt:M1CZP6 |
| MapMan:15.3.4.2.1 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030447]
Coordinates
chr6:-:57353290..57356165
Molecular Weight (calculated)
19076.0 Da
IEP (calculated)
5.624
GRAVY (calculated)
-0.623
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MSASNEDNIS QPQLSAHVFD ELLDSIITDV ASECHRVAKL GLDRNLEEEE EELRLSAQAR ATVADPSNSS ETNGKYVVDI FGQTHPPVAT EIFECMNCGR
101: SIMAGRFAPH LEKCMGKGRK ARLKATRSST AQNRYTRGSS ASTYSPYSTP TSTSRLPNGS SGVSGHEYSN GSLEDL
101: SIMAGRFAPH LEKCMGKGRK ARLKATRSST AQNRYTRGSS ASTYSPYSTP TSTSRLPNGS SGVSGHEYSN GSLEDL
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.