Factsheet for VIT_06s0004g06970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_09s0054g00440.t01
VIT_14s0068g02060.t01
VIT_19s0015g01810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58575.1	VIT_09s0054g00440.t01	AT3G21175.1	21798944
AT5G58575.1	VIT_14s0068g02060.t01	AT3G27100.1	21798944
AT5G58575.1	VIT_19s0015g01810.t01	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30221	Soybean	cytosol	82.74	76.8
PGSC0003DMT400078237	Potato	nucleus	79.76	76.14
GSMUA_Achr5P28120_001	Banana	mitochondrion	33.33	70.0
KRG98249	Soybean	endoplasmic reticulum, plasma membrane	76.79	66.84
AT5G58575.1	Thale cress	cytosol, nucleus, plastid	67.26	62.43
Bra006753.1-P	Field mustard	mitochondrion	24.4	62.12
CDY65780	Canola	cytosol, nucleus, plastid	59.52	62.11
TraesCS1A01G223200.1	Wheat	cytosol, nucleus, plastid	51.19	54.43
TraesCS1D01G224800.1	Wheat	cytosol, nucleus, plastid	51.19	54.43
HORVU1Hr1G060100.2	Barley	cytosol, nucleus, plastid	50.0	54.19
Os05t0351500-01	Rice	cytosol	54.17	48.66
EES18037	Sorghum	cytosol	52.38	46.07
TraesCS1B01G236500.1	Wheat	extracellular, golgi, plastid	51.19	41.35
Zm00001d038002_P001	Maize	nucleus	52.38	40.37
Solyc06g082160.2.1	Tomato	plastid	79.17	39.58

Protein Annotations

EntrezGene:100854968	wikigene:100854968	MapMan:15.3.4.2.1	Gene3D:3.30.160.60	ProteinID:CCB43459	ProteinID:CCB43459.1
UniProt:F6GUM6	EMBL:FN594951	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
EntrezGene:LOC100854968	wikigene:LOC100854968	PFAM:PF08209	PANTHER:PTHR15117	PANTHER:PTHR15117:SF22	InterPro:SAGA_su_Sgf11
TIGR:TC66741	UniParc:UPI0002108349	ArrayExpress:VIT_06s0004g06970	EnsemblPlantsGene:VIT_06s0004g06970	EnsemblPlants:VIT_06s0004g06970.t01	RefSeq:XP_003632167
RefSeq:XP_003632167.1	SEG:seg	:	:	:	:

Description

SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:F6GUM6]

Coordinates

chr6:-:7679013..7682411

Molecular Weight (calculated)

18224.2 Da

IEP (calculated)

6.510

GRAVY (calculated)

-0.545

Length

168 amino acids

Sequence
(BLAST)

001: MSSQLSSHFF GDLLDSIIVD VASECHRIAR LGLDRNLEEE EEELRLSAQA RVRVADPSNS GEANSKYVVD IFGQSHPAIA SEIFECMNCG RSIMAGRFAP
101: HLEKCMGKGR KARLKATRSS TAAQNRYSRG SPVSSYSPYS NSTSTSRLSN GTPGVGGEEY SNGTLEEP

Best Arabidopsis Sequence Match ( AT5G58575.1 )
(BLAST)

001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D

Arabidopsis Description

SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.