Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98249 | Soybean | endoplasmic reticulum, plasma membrane | 88.4 | 82.9 |
| VIT_06s0004g06970.t01 | Wine grape | cytosol | 76.8 | 82.74 |
| PGSC0003DMT400078237 | Potato | nucleus | 75.14 | 77.27 |
| GSMUA_Achr5P28120_001 | Banana | mitochondrion | 29.28 | 66.25 |
| CDY65780 | Canola | cytosol, nucleus, plastid | 58.01 | 65.22 |
| AT5G58575.1 | Thale cress | cytosol, nucleus, plastid | 64.64 | 64.64 |
| Bra006753.1-P | Field mustard | mitochondrion | 22.65 | 62.12 |
| HORVU1Hr1G060100.2 | Barley | cytosol, nucleus, plastid | 46.96 | 54.84 |
| TraesCS1A01G223200.1 | Wheat | cytosol, nucleus, plastid | 47.51 | 54.43 |
| TraesCS1D01G224800.1 | Wheat | cytosol, nucleus, plastid | 47.51 | 54.43 |
| Os05t0351500-01 | Rice | cytosol | 49.72 | 48.13 |
| EES18037 | Sorghum | cytosol | 48.07 | 45.55 |
| TraesCS1B01G236500.1 | Wheat | extracellular, golgi, plastid | 47.51 | 41.35 |
| Zm00001d038002_P001 | Maize | nucleus | 48.07 | 39.91 |
| Solyc06g082160.2.1 | Tomato | plastid | 74.03 | 39.88 |
Protein Annotations
| EMBL:ACUP02006918 | EnsemblPlants:KRH30221 | EnsemblPlantsGene:GLYMA_11G168600 | EntrezGene:100802564 | Gene3D:3.30.160.60 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:SAGA_su_Sgf11 | PANTHER:PTHR15117 | PANTHER:PTHR15117:SF22 |
| PFAM:PF08209 | ProteinID:KRH30221 | ProteinID:KRH30221.1 | SEG:seg | UniParc:UPI000233CB44 | UniProt:I1LLP0 |
| MapMan:15.3.4.2.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:17274288..17278082
Molecular Weight (calculated)
19761.9 Da
IEP (calculated)
6.236
GRAVY (calculated)
-0.596
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVPNEENLS SHSQLSSHFF LDLLDSIIVD VASECHRVAR LGLDSNLEEE DEELKLSAQA RVRVADPSNS NEANGKYVVD IFGQTHPPVA NEIFDCMNCG
101: RSIMAGRFAP HLEKCMGKGR KARLKVTRSS TAAQNRYSRG SPSPGSTYSP YSNYSTNSMN RLANGTSTFA GEEHSNGTLE S
101: RSIMAGRFAP HLEKCMGKGR KARLKVTRSS TAAQNRYSRG SPSPGSTYSP YSNYSTNSMN RLANGTSTFA GEEHSNGTLE S
001: MSGAEDNKSS HAQLSSQIFL DLVDSVIADV ASECHRVARL GLDRDLDIVE EELRLSVEAR AKIADPSNNL ETNTKYVVDI FGQTHPPVAS EVFNCMNCGR
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
101: QIVAGRFAPH LEKCMGKGRK ARAKTTRSTT AAQNRNARRS PNPRYSPYPN SASENQLASG SPGVAGEDCS NFTVRENVKG D
Arabidopsis Description
SAGA-associated factor 11 [Source:UniProtKB/TrEMBL;Acc:Q94BV2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.